Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F60 I1 R1 24 41.1 1397072 98.8% 1380307 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,617,550 Δ14 bp coding (523‑536/1191 nt) ydeA → L‑arabinose exporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1617550 1617563 14 48 [0] [0] 48 ydeA L‑arabinose exporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16175490 (0.000)48 (1.180) 38/272 0.1 100% coding (522/1191 nt) ydeA L‑arabinose exporter
?NC_000913 1617564 = 0 (0.000)coding (537/1191 nt) ydeA L‑arabinose exporter

GATK/CNVnator alignment

N/A