Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F60 I1 R1
|
17 |
33.2 |
1123130 |
98.8% |
1109652 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
1,492,315 |
IS1 (+) +9 bp |
intergenic (+141/‑147) |
sokB → / → trg |
putative small regulatory RNA SokB/methyl‑accepting chemotaxis protein Trg |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
1492315 = | 0 (0.000) | 33 (1.000) |
28/276 |
0.2 |
100% |
intergenic (+141/‑155) |
sokB/trg |
putative small regulatory RNA SokB/methyl‑accepting chemotaxis protein Trg |
| ? | NC_000913 |
1978503 = |
NA (NA) | noncoding (768/768 nt) |
IS1 |
repeat region |
| * |
? |
NC_000913 |
= 1492323 | 0 (0.000) | 27 (0.830) |
24/274 |
0.4 |
100% |
intergenic (+149/‑147) |
sokB/trg |
putative small regulatory RNA SokB/methyl‑accepting chemotaxis protein Trg |
| ? | NC_000913 |
= 1979270 |
NA (NA) | noncoding (1/768 nt) |
IS1 |
repeat region |
TGATAGAAAGTCATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1492440‑1492315
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > NC_000913/1978503‑1978637
TGATAGAAAGTCATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAA > 1:346961/1‑140
GATAGAAAGTCATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAAC > 1:556146/1‑140
AGTCATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGA < 2:127259/140‑1
CATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAG > 2:299130/1‑140
ATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGT < 2:556146/140‑1
ATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGT < 2:412464/140‑1
ATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGT > 2:373394/1‑140
GACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT < 2:346961/140‑1
TAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT > 2:125116/1‑140
TGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAT > 1:40612/1‑140
ACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCACGATGA < 1:127181/140‑1
CCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA < 2:79498/140‑1
CTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC > 2:297506/1‑140
CATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCG < 1:334790/140‑1
AATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACG < 2:40612/140‑1
TAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT > 1:448764/1‑140
AGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTC < 1:297506/140‑1
AATGCTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAG < 1:373394/140‑1
CTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑C > 2:492523/1‑132
CTATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑C < 1:492523/132‑1
TATTGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTG < 1:549958/140‑1
TGGAATGAAGAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCA < 1:125116/140‑1
GAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGG > 1:407395/1‑133
GAGAGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGG < 2:407395/133‑1
AGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCCAGCCGTGCCAGGTGCTGCCTC > 1:485452/1‑140
AGTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCA > 1:485451/1‑140
GTAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAG > 1:518795/1‑140
TAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGA > 2:183074/1‑140
TAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGA > 1:37922/1‑140
TAACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGA > 2:41410/1‑140
ACGAATGGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGATT < 2:118820/140‑1
GGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > 1:1806/1‑140
GGCTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > 1:148099/1‑140
TGATAGAAAGTCATCGGCACTTGACGGTAATTACTTATGACCAAAAACCTCTTTGCGTCACATTTTTACAACAATTATTGCATAGAAAATTAATGCTATTGGAATGAAGAGAGTAACGAATGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1492440‑1492315
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGT‑CCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > NC_000913/1978503‑1978637
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
