Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F60 I1 R1 26 145.4 4915572 98.9% 4861500 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,408,194 C→T H49Y (CAC→TAC)  zntB → Zn(2(+)):H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,408,1940CT100.0% 511.9 / NA 143H49Y (CAC→TAC) zntBZn(2(+)):H(+) symporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (78/65);  total (78/65)

Only 100 of 144 total aligned reads displayed.

GATTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTACACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTGCGCTGTATA  >  NC_000913/1408058‑1408328
                                                                                                                                        |                                                                                                                                      
gATTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATAcc                                                                                                                                     <  2:738197/140‑1 (MQ=255)
 aTTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCa                                                                                                                                    >  2:1333013/1‑140 (MQ=255)
 aTTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCa                                                                                                                                    >  2:2354296/1‑140 (MQ=255)
 aTTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCa                                                                                                                                    >  2:324718/1‑140 (MQ=255)
 aTTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCa                                                                                                                                    >  1:64428/1‑140 (MQ=255)
 aTTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCa                                                                                                                                    >  1:4115/1‑140 (MQ=255)
   tAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATg                                                                                                                                  >  1:1921565/1‑140 (MQ=255)
                 ttAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATa                                                                                                                               >  2:215093/1‑129 (MQ=255)
                 ttAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATa                                                                                                                               <  1:215093/129‑1 (MQ=255)
                   aaTGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAAtggct                                                                                                                  <  1:1581166/140‑1 (MQ=255)
                      gTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAAtggctggc                                                                                                               <  2:64428/140‑1 (MQ=255)
                      gTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCACCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAAtggctggc                                                                                                               <  2:2145479/140‑1 (MQ=255)
                         ccGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGac                                                                                                            <  1:2293234/140‑1 (MQ=255)
                         ccGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGac                                                                                                            <  1:1618139/140‑1 (MQ=255)
                            gATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGacaac                                                                                                         >  1:961442/1‑140 (MQ=255)
                            gATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGacaac                                                                                                         >  2:1567466/1‑140 (MQ=255)
                              tGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAacac                                                                                                       <  1:380252/140‑1 (MQ=255)
                                 aGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAAtggct                                                                                                                  >  1:222401/1‑126 (MQ=255)
                                   tATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCgctg                                                                                                  <  1:2166079/140‑1 (MQ=255)
                                   tATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCgctg                                                                                                  <  1:70700/140‑1 (MQ=255)
                                     tttGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCgctgct                                                                                                <  1:2240463/140‑1 (MQ=255)
                                       tGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTc                                                                                              >  1:1576723/1‑140 (MQ=255)
                                       tGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTc                                                                                              >  2:224278/1‑140 (MQ=255)
                                        gCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCgc                                                                                                    >  1:186693/1‑133 (MQ=255)
                                        gCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTcc                                                                                             <  1:1691243/140‑1 (MQ=255)
                                          ctggatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCgctgct                                                                                                >  2:1187810/1‑135 (MQ=255)
                                          ctggatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCgctgct                                                                                                <  1:1187810/135‑1 (MQ=255)
                                            ggatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAAt                                                                                         <  1:1059580/140‑1 (MQ=255)
                                             gatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATa                                                                                        >  2:383808/1‑140 (MQ=255)
                                             gatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATa                                                                                        >  1:480360/1‑140 (MQ=255)
                                             gatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATa                                                                                        >  1:661715/1‑140 (MQ=255)
                                             gatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATa                                                                                        >  1:203763/1‑140 (MQ=255)
                                             gatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATa                                                                                        >  2:1532996/1‑140 (MQ=255)
                                             gatgctggatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATa                                                                                        >  1:1781243/1‑140 (MQ=255)
                                                    gatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAacgtacg                                                                                 <  2:1576723/140‑1 (MQ=255)
                                                    gatgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAacgtacg                                                                                 <  1:45619/140‑1 (MQ=255)
                                                      tgGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTg                                                                               <  2:475918/140‑1 (MQ=255)
                                                         tAGAGGCGGCGTTAAA‑CGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAAt                                                                                         >  2:1498219/1‑126 (MQ=255)
                                                         tAGAGGCGGCGTTAAA‑CGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAAt                                                                                         <  1:1498219/126‑1 (MQ=255)
                                                              gcggcgTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTg                                                                       >  1:1710068/1‑140 (MQ=255)
                                                                 gcgTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTggcg                                                                    >  2:1360198/1‑140 (MQ=255)
                                                                   gTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTggcggg                                                                  >  2:2357896/1‑140 (MQ=255)
                                                                    ttAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTggcgggc                                                                 <  1:1868224/140‑1 (MQ=255)
                                                                            cTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCAc                                                         >  1:576911/1‑140 (MQ=255)
                                                                             tGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCAcg                                                        <  1:269845/140‑1 (MQ=255)
                                                                                         aTGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTc                                            >  1:894894/1‑140 (MQ=255)
                                                                                         aTGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTc                                            >  1:2026915/1‑140 (MQ=255)
                                                                                            tgattgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGc                                         <  1:1534195/140‑1 (MQ=255)
                                                                                              attgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCg                                       >  1:250107/1‑140 (MQ=255)
                                                                                              attgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCg                                       >  1:1061329/1‑140 (MQ=255)
                                                                                              attgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCg                                       >  1:144379/1‑140 (MQ=255)
                                                                                              attgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCg                                       >  1:433146/1‑140 (MQ=255)
                                                                                              attgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGCCAGCCg                                       >  1:967455/1‑140 (MQ=255)
                                                                                               ttgatGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGt                                      <  2:113045/140‑1 (MQ=255)
                                                                                                 gatgaAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGtct                                    <  1:2097006/140‑1 (MQ=255)
                                                                                                 gatgaAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGtct                                    <  2:290409/140‑1 (MQ=255)
                                                                                                   tgaAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCg                                  >  2:801915/1‑140 (MQ=255)
                                                                                                   tgaAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCg                                  >  1:231862/1‑140 (MQ=255)
                                                                                                   tgaAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCg                                  >  1:1713268/1‑140 (MQ=255)
                                                                                                   tgaAGCGCATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCg                                  >  2:1400401/1‑140 (MQ=255)
                                                                                                        cgcATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGaa                             >  1:141122/1‑140 (MQ=255)
                                                                                                         gcATCCCTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAg                            <  1:1480837/140‑1 (MQ=255)
                                                                                                             cccTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCAc                        <  1:1400401/140‑1 (MQ=255)
                                                                                                             cccTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCAc                        <  2:1713268/140‑1 (MQ=255)
                                                                                                             cccTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCAc                        <  1:1567466/140‑1 (MQ=255)
                                                                                                             cccTGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCAc                        <  1:529346/140‑1 (MQ=255)
                                                                                                                tGTTGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCt                     >  2:785817/1‑140 (MQ=255)
                                                                                                                  ttGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTTCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGa                   <  2:661715/140‑1 (MQ=255)
                                                                                                                  ttGGCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGa                   <  2:480360/140‑1 (MQ=255)
                                                                                                                     gCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTa                >  2:820453/1‑140 (MQ=255)
                                                                                                                     gCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTa                >  1:776479/1‑140 (MQ=255)
                                                                                                                     gCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTa                >  2:1790933/1‑140 (MQ=255)
                                                                                                                     gCTCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTa                >  1:725332/1‑140 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCa                         <  2:2092531/129‑1 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCa                         >  1:2092531/1‑129 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGc                      >  2:1968864/1‑132 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGc                      <  1:1968864/132‑1 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGa                   >  2:1649351/1‑135 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGa                   <  1:1649351/135‑1 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACa              <  2:1885978/140‑1 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACa              <  2:842400/140‑1 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACa              >  2:1298223/1‑140 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACa              >  1:862441/1‑140 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACa              >  1:2230029/1‑140 (MQ=255)
                                                                                                                       tCCACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGCCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACa              >  1:2020651/1‑140 (MQ=255)
                                                                                                                        ccACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACg                       <  2:430924/130‑1 (MQ=255)
                                                                                                                         cACCTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACAtt            >  2:581748/1‑140 (MQ=255)
                                                                                                                          aCCTTAATTATGTATACCATGATAGCGCCCAATGACTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTg           >  2:2254591/1‑140 (MQ=255)
                                                                                                                            cTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTgcg         <  1:820453/140‑1 (MQ=255)
                                                                                                                            cTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTgcg         <  1:1182077/140‑1 (MQ=255)
                                                                                                                            cTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTgcg         <  2:2183847/140‑1 (MQ=255)
                                                                                                                            cTTAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTgcg         <  2:862441/140‑1 (MQ=255)
                                                                                                                             ttAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTgcgc        <  1:801915/140‑1 (MQ=255)
                                                                                                                              tAATTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTGCGCt       <  1:1787942/140‑1 (MQ=255)
                                                                                                                               aaTTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGc                      <  1:1028701/124‑1 (MQ=255)
                                                                                                                               aaTTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGc                      >  2:1028701/1‑124 (MQ=255)
                                                                                                                                aTTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTGCGCTGt     <  2:433146/140‑1 (MQ=255)
                                                                                                                                aTTATGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTGCGCTGt     <  2:576911/140‑1 (MQ=255)
                                                                                                                                   aTGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTgcg         <  2:617436/133‑1 (MQ=255)
                                                                                                                                   aTGTATACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTGCGCTGtata  >  2:186742/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GATTAAGGGATCGGACGTTAATGTCCCGGATGCAGTATTTGCCTGGATGCTGGATGGTAGAGGCGGCGTTAAACCGCTGGAAAATACAGATGTGATTGATGAAGCGCATCCCTGTTGGCTCCACCTTAATTATGTACACCATGATAGCGCCCAATGGCTGGCGACAACACCGCTGCTTCCCAATAACGTACGTGATGCGCTGGCGGGCGAGAGCACGCGTCCCCGAGTCAGCCGTCTCGGTGAAGGCACGCTGATTACATTGCGCTGTATA  >  NC_000913/1408058‑1408328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A