Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F60 I1 R1 20 85.9 2954762 98.8% 2919304 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,020,939 A→G intergenic (‑20/‑199) sulA ← / → sxy cell division inhibitor SulA/transcriptional coactivator for CRP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,020,9390AG100.0% 368.8 / NA 94intergenic (‑20/‑199)sulA/sxycell division inhibitor SulA/transcriptional coactivator for CRP
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (49/45);  total (49/45)

CGATAGACAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTT  >  NC_000913/1020804‑1021075
                                                                                                                                       |                                                                                                                                        
cgATAGACAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTa                                                                                                                                      <  1:1133824/140‑1 (MQ=255)
   tAGACAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGt                                                                                                                                        >  1:1181448/1‑135 (MQ=255)
   tAGACAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTg                                                                                                                                   <  1:363636/140‑1 (MQ=255)
   tAGACAACTTCACTGATAAGCCCGGCTGTAGTGGTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTg                                                                                                                                   >  2:11346/1‑140 (MQ=255)
      aCAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTAt                                                                                                                                <  2:28099/140‑1 (MQ=255)
      aCAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTAt                                                                                                                                <  1:124450/140‑1 (MQ=255)
      aCAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTAt                                                                                                                                <  2:24556/140‑1 (MQ=255)
        aaCTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATgg                                                                                                                              <  2:1085983/140‑1 (MQ=255)
        aaCTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATgg                                                                                                                              <  2:1305573/140‑1 (MQ=255)
           ttCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATg                                                                                                                           >  1:1126126/1‑140 (MQ=255)
           ttCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATg                                                                                                                           <  2:659252/140‑1 (MQ=255)
            tCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgt                                                                                                                          <  1:827616/140‑1 (MQ=255)
            tCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgt                                                                                                                          <  1:271483/140‑1 (MQ=255)
            tCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgt                                                                                                                          <  2:328964/140‑1 (MQ=255)
             cACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgta                                                                                                                         <  1:691295/140‑1 (MQ=255)
              aCTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgtac                                                                                                                        <  2:758705/140‑1 (MQ=255)
                tGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgtacag                                                                                                                      <  2:804080/140‑1 (MQ=255)
                tGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgtacag                                                                                                                      >  1:590599/1‑140 (MQ=255)
                  aTAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgtacagta                                                                                                                    >  1:231365/1‑140 (MQ=255)
                  aTAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgtacagta                                                                                                                    <  1:208820/140‑1 (MQ=255)
                     aGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgt                                                                                                                          <  2:790469/131‑1 (MQ=255)
                     aGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATgt                                                                                                                          >  1:790469/1‑131 (MQ=255)
                     aGCCCGACTGTCGTGTTTTCCGTAGAGACACGCGCACTTTTACTCGCTGCGGATGAGAACGCCTAGGAACGATGGGCATAGCCTGAAGTGTACATAATCAATTCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACAt                                                                                                                 >  2:486718/1‑140 (MQ=255)
                       cccGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATcc                                                                                                               <  2:1099810/140‑1 (MQ=255)
                       cccGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATcc                                                                                                               >  2:529978/1‑140 (MQ=255)
                       cccGACTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATcc                                                                                                               <  2:434410/140‑1 (MQ=255)
                         cGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAg                                                                                                             >  1:806826/1‑140 (MQ=255)
                          ggCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGt                                                                                                            <  2:459838/140‑1 (MQ=255)
                            cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGt                                                                                                            >  1:1444325/1‑138 (MQ=255)
                            cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGt                                                                                                            <  2:1444325/138‑1 (MQ=255)
                            cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          <  2:231365/140‑1 (MQ=255)
                            cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          >  2:360875/1‑140 (MQ=255)
                            cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          >  1:1037916/1‑140 (MQ=255)
                                     tttCCGTAGAGACACGCGCAATTTTACTTGCTGTGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTTCTGTATGGATGTACAGTGCATCCAGTGACAACAAAGa                                                                                                 <  1:486718/140‑1 (MQ=255)
                                       tCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATc                                                                                               >  2:962386/1‑140 (MQ=255)
                                       tCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATc                                                                                               <  2:589481/140‑1 (MQ=255)
                                            agagACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          <  2:1392103/124‑1 (MQ=255)
                                            agagACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          >  1:1392103/1‑124 (MQ=255)
                                              agaCACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          <  2:1024102/122‑1 (MQ=255)
                                              agaCACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGa                                                                                                          >  1:1024102/1‑122 (MQ=255)
                                                       cAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGaa                                                                               >  2:785428/1‑140 (MQ=255)
                                                                 tgctgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGc                                                                     <  1:360875/140‑1 (MQ=255)
                                                                  gctgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCa                                                                    >  1:962802/1‑140 (MQ=255)
                                                                  gctgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCa                                                                    >  1:562977/1‑140 (MQ=255)
                                                                  gctgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCa                                                                    >  1:185773/1‑140 (MQ=255)
                                                                    tgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCaaa                                                                  >  1:134513/1‑140 (MQ=255)
                                                                    tgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCaaa                                                                  >  2:305406/1‑140 (MQ=255)
                                                                    tgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCaaa                                                                  >  2:842051/1‑140 (MQ=255)
                                                                                cgacgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTgg                                                      >  2:1062922/1‑140 (MQ=255)
                                                                                   cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGa                                                   <  1:1062922/140‑1 (MQ=255)
                                                                                   cgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGa                                                   <  2:1126126/140‑1 (MQ=255)
                                                                                         aCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGaa                                             <  1:550008/140‑1 (MQ=255)
                                                                                            aTGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc                                          <  2:806826/140‑1 (MQ=255)
                                                                                            aTGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc                                          <  2:185773/140‑1 (MQ=255)
                                                                                            aTGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc                                          <  1:305406/140‑1 (MQ=255)
                                                                                            aTGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc                                          <  1:563039/140‑1 (MQ=255)
                                                                                                  aTAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAAt                                    <  2:962802/140‑1 (MQ=255)
                                                                                                     gCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTaa                                 >  2:556342/1‑140 (MQ=255)
                                                                                                      ccTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAAt                                >  2:219870/1‑140 (MQ=255)
                                                                                                       cTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATc                               >  2:957514/1‑140 (MQ=255)
                                                                                                        tGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                         >  1:1308496/1‑129 (MQ=255)
                                                                                                        tGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACa                                         <  2:1308496/129‑1 (MQ=255)
                                                                                                              gtACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGcccc                        <  2:1037916/140‑1 (MQ=255)
                                                                                                              gtACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGcccc                        >  1:1402975/1‑140 (MQ=255)
                                                                                                               tACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCt                       >  2:134998/1‑140 (MQ=255)
                                                                                                               tACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCt                       >  2:1389176/1‑140 (MQ=255)
                                                                                                               tACATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCt                       >  2:1001988/1‑140 (MQ=255)
                                                                                                                aCATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                      >  2:836593/1‑140 (MQ=255)
                                                                                                                aCATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                      >  2:1073928/1‑140 (MQ=255)
                                                                                                                aCATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                      >  1:904548/1‑140 (MQ=255)
                                                                                                                aCATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCtt                      >  2:1349871/1‑140 (MQ=255)
                                                                                                                 cATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                           >  2:1167073/1‑134 (MQ=255)
                                                                                                                 cATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                           >  1:766243/1‑134 (MQ=255)
                                                                                                                 cATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                           <  2:766243/134‑1 (MQ=255)
                                                                                                                 cATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGc                           <  1:1167073/134‑1 (MQ=255)
                                                                                                                 cATAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTa                     >  2:1376286/1‑140 (MQ=255)
                                                                                                                   tAATCAATCCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAg                   <  2:770190/140‑1 (MQ=255)
                                                                                                                    aatcaatcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCt                       >  1:670696/1‑135 (MQ=255)
                                                                                                                    aatcaatcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCt                       <  2:670696/135‑1 (MQ=255)
                                                                                                                       caatcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATa               >  1:429406/1‑140 (MQ=255)
                                                                                                                         atcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg             >  1:654355/1‑140 (MQ=255)
                                                                                                                         atcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg             >  2:1365208/1‑140 (MQ=255)
                                                                                                                         atcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg             <  1:556342/140‑1 (MQ=255)
                                                                                                                         atcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg             >  2:1136365/1‑140 (MQ=255)
                                                                                                                         atcCAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAg             >  2:119231/1‑140 (MQ=255)
                                                                                                                            cAGCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTg          >  2:1036070/1‑140 (MQ=255)
                                                                                                                              gCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc        >  1:1134103/1‑140 (MQ=255)
                                                                                                                              gCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc        >  2:605519/1‑140 (MQ=255)
                                                                                                                              gCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc        <  1:1349871/140‑1 (MQ=255)
                                                                                                                              gCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc        <  2:1134103/140‑1 (MQ=255)
                                                                                                                              gCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc        <  2:1402975/140‑1 (MQ=255)
                                                                                                                              gCCCCTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGcc        >  1:75734/1‑140 (MQ=255)
                                                                                                                                cccTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAAt                <  1:218183/130‑1 (MQ=255)
                                                                                                                                cccTGTGGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAAt                >  2:218183/1‑130 (MQ=255)
                                                                                                                                    gtgGGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTAtttt  >  2:640009/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                        
CGATAGACAACTTCACTGATAAGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTT  >  NC_000913/1020804‑1021075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A