Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A24 F60 I1 R1 14 76.3 2604456 98.8% 2573202 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,921,103 Δ6 bp coding (82‑87/240 nt) atpE ← ATP synthase Fo complex subunit c

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3921103 3921108 6 95 [0] [0] 93 atpE ATP synthase Fo complex subunit c

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39211020 (0.000)93 (1.250) 53/268 0.2 100% coding (88/240 nt) atpE ATP synthase Fo complex subunit c
?NC_000913 3921109 = 0 (0.000)coding (81/240 nt) atpE ATP synthase Fo complex subunit c

GATK/CNVnator alignment

N/A