Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A26 F60 I1 R1 17 54.2 1827820 99.0% 1809541 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,198,498 (AATGATGA)6→5 intergenic (‑261/‑190) ymfE ← / → lit e14 prophage; uncharacterized protein YmfE/e14 prophage; cell death peptidase Lit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1198454 1198461 8 90 [0] [0] 90 ymfE/lit e14 prophage; uncharacterized protein YmfE/e14 prophage; cell death peptidase Lit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1198462 =0 (0.000)63 (1.720) 34/190 0.1 100% intergenic (‑225/‑233) ymfE/lit e14 prophage; uncharacterized protein YmfE/e14 prophage; cell death peptidase Lit
?NC_000913 = 1198453 0 (0.000)intergenic (‑216/‑242) ymfE/lit e14 prophage; uncharacterized protein YmfE/e14 prophage; cell death peptidase Lit

GATK/CNVnator alignment

N/A