Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	140	59.4	2004938	99.3%	1990903	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	926,229	C→T	R72H (CGC→CAC)	infA ←	translation initiation factor IF‑1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	926,229	0	C	T	100.0%	287.2 / NA	82	R72H (CGC→CAC)	infA	translation initiation factor IF‑1
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (45/37); total (45/37)

TATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCG  >  NC_000913/926097‑926360

tataTCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACg                                                                                                                              >  1:95576/1‑140 (MQ=255)

tataTCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACg                                                                                                                              <  2:903992/140‑1 (MQ=255)

    tCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAg                                                                                                                          <  1:446274/140‑1 (MQ=255)

     cTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGa                                                                                                                         >  1:681758/1‑140 (MQ=255)

       aCATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACa                                                                                                                       >  1:617877/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATTTCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  1:169340/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  2:733270/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  2:649176/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  1:181163/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  2:397340/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  2:276887/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  2:241405/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  1:684873/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  2:93989/1‑140 (MQ=255)

          tCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATg                                                                                                                    >  1:799162/1‑140 (MQ=255)

           cGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGc                                                                                                                   >  2:456885/1‑140 (MQ=255)

           cGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGc                                                                                                                   <  1:407131/140‑1 (MQ=255)

            gagaCAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCg                                                                                                                  >  1:961328/1‑140 (MQ=255)

             agaCAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCgg                                                                                                                 >  2:659800/1‑140 (MQ=255)

             agaCAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCgg                                                                                                                 >  1:701551/1‑140 (MQ=255)

             agaCAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCgg                                                                                                                 >  1:994333/1‑140 (MQ=255)

             agaCAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCgg                                                                                                                 >  1:332712/1‑140 (MQ=255)

             agaCAAGTTACGAACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCgg                                                                                                                 >  2:761988/1‑140 (MQ=255)

              gaCAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGc                                                                                                                <  2:994333/140‑1 (MQ=255)

                cAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCt                                                                                                              >  1:539608/1‑140 (MQ=255)

                  aGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCttt                                                                                                            >  1:192520/1‑140 (MQ=255)

                     tACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCt                                                                                                         <  2:332712/140‑1 (MQ=255)

                     tACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCt                                                                                                         <  2:504932/140‑1 (MQ=255)

                         gACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAgg                                                                                                     <  2:961328/140‑1 (MQ=255)

                          aCTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGt                                                                                                    <  2:95576/140‑1 (MQ=255)

                              ataCTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTa                                                                                                <  2:681758/140‑1 (MQ=255)

                              ataCTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTa                                                                                                >  1:315267/1‑140 (MQ=255)

                               taCTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTAc                                                                                               <  2:617877/140‑1 (MQ=255)

                                    ccAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGt                                                                                          <  2:465037/140‑1 (MQ=255)

                                    ccAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGt                                                                                          <  1:699725/140‑1 (MQ=255)

                                        aGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGt                                                                                      <  1:198111/140‑1 (MQ=255)

                                         gTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGtt                                                                                     <  2:539608/140‑1 (MQ=255)

                                          tACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTc                                                                                    <  2:237533/140‑1 (MQ=255)

                                            cTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCaa                                                                                  >  1:94705/1‑140 (MQ=255)

                                            cTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCaa                                                                                  >  2:380153/1‑140 (MQ=255)

                                            cTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGACCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCaa                                                                                  >  1:385482/1‑140 (MQ=255)

                                                    atatCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGt                                                                                          <  1:320724/124‑1 (MQ=255)

                                                    atatCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGt                                                                                          >  2:320724/1‑124 (MQ=255)

                                                      atCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCa                                                                                   <  1:604997/129‑1 (MQ=255)

                                                      atCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCa                                                                                   >  2:604997/1‑129 (MQ=255)

                                                      atCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACttt                                                                        >  2:390673/1‑140 (MQ=255)

                                                      atCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACttt                                                                        >  2:548720/1‑140 (MQ=255)

                                                        cacaAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGt                                                                      <  1:649176/140‑1 (MQ=255)

                                                         acaAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTc                                                                     >  2:908634/1‑140 (MQ=255)

                                                         acaAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCATTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTc                                                                     >  2:83774/1‑140 (MQ=255)

                                                          caAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCg                                                                    <  2:315267/140‑1 (MQ=255)

                                                          caAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCg                                                                    <  1:241405/140‑1 (MQ=255)

                                                              aTAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCg                                                                >  2:469187/1‑140 (MQ=255)

                                                              aTAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCACCCg                                                                >  2:821842/1‑140 (MQ=255)

                                                               tAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGt                                                               <  1:380153/140‑1 (MQ=255)

                                                                  aaaGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAg                                                            >  1:984825/1‑140 (MQ=255)

                                                                      gCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATg                                                        <  2:125318/140‑1 (MQ=255)

                                                                      gCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATg                                                        <  2:984825/140‑1 (MQ=255)

                                                                      gCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATg                                                        <  2:169340/140‑1 (MQ=255)

                                                                      gCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATg                                                        <  1:191431/140‑1 (MQ=255)

                                                                         ggTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTc                                                                     >  1:68674/1‑124 (MQ=255)

                                                                         ggTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTc                                                                     <  2:68674/124‑1 (MQ=255)

                                                                                    ccTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGttttt                                          >  2:237658/1‑140 (MQ=255)

                                                                                     cTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTg                                         <  2:716340/140‑1 (MQ=255)

                                                                                       tttACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTCTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTgcg                                       <  1:469187/140‑1 (MQ=255)

                                                                                         tACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCa                                     >  2:493535/1‑140 (MQ=255)

                                                                                            tCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCAttt                                  <  1:548720/140‑1 (MQ=255)

                                                                                                 ctttctCTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCg                             <  1:468246/140‑1 (MQ=255)

                                                                                                    tctcTTCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGgag                          <  1:237658/140‑1 (MQ=255)

                                                                                                       ctTCGACCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAtg                       <  2:385482/140‑1 (MQ=255)

                                                                                                        ttCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAtgt                      >  1:163422/1‑140 (MQ=255)

                                                                                                         tCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAtgtg                     <  1:908634/140‑1 (MQ=255)

                                                                                                         tCGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCATTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAtgtg                     <  1:83774/140‑1 (MQ=255)

                                                                                                          cGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAtgtgt                    >  2:837393/1‑140 (MQ=255)

                                                                                                          cGCCCATCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGAtgtgt                    >  2:857479/1‑140 (MQ=255)

                                                                                                               aTCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGt               <  2:340775/140‑1 (MQ=255)

                                                                                                                tCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTa              >  2:936692/1‑140 (MQ=255)

                                                                                                                tCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTa              >  1:357832/1‑140 (MQ=255)

                                                                                                                tCAGGCGGTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTa              >  1:426821/1‑140 (MQ=255)

                                                                                                                       gTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGt       >  2:241732/1‑140 (MQ=255)

                                                                                                                       gTAAAACAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGt       >  2:545676/1‑140 (MQ=255)

                                                                                                                          aaaCAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGAc    <  2:94705/140‑1 (MQ=255)

                                                                                                                            aCAATCAGTGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCg  <  1:93989/140‑1 (MQ=255)

TATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCG  >  NC_000913/926097‑926360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A