Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 140 77.1 2730754 94.9% 2591485 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,224,623 A→G L247L (TTG→CTG)  minD ← Z‑ring positioning protein MinD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,224,6230AG98.5% 238.1 / ‑4.3 68L247L (TTG→CTG) minDZ‑ring positioning protein MinD
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (34/33);  total (34/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.65e-01

TTCTTTTGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAACAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGATGCGCAGGA  >  NC_000913/1224486‑1224757
                                                                                                                                         |                                                                                                                                      
ttCTTTTGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCa                                                                                                                                      >  1:1037235/1‑140 (MQ=255)
ttCTTTTGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCa                                                                                                                                      >  2:563378/1‑140 (MQ=255)
    tttGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACg                                                                                                                                  <  2:1164713/140‑1 (MQ=255)
     ttGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGt                                                                                                                                 <  2:490642/140‑1 (MQ=255)
     ttGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAACAGACGt                                                                                                                                 <  2:720004/140‑1 (MQ=255)
             ttGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTa                                                                                                                             >  1:538761/1‑136 (MQ=255)
             ttGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTa                                                                                                                             <  2:538761/136‑1 (MQ=255)
               ggCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTAt                                                                                                                       >  1:1199617/1‑140 (MQ=255)
               ggCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTAt                                                                                                                       >  1:1215156/1‑140 (MQ=255)
               ggCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTAt                                                                                                                       >  1:1268933/1‑140 (MQ=255)
                gCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTAt                                                                                                                       >  2:326052/1‑139 (MQ=255)
                gCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTAt                                                                                                                       <  1:326052/139‑1 (MQ=255)
                gCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATc                                                                                                                      >  1:282232/1‑140 (MQ=255)
                gCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATc                                                                                                                      <  2:1037235/140‑1 (MQ=255)
                     gtTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGt                                                                                                                 >  1:477320/1‑140 (MQ=255)
                              ccGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTAc                                                                                                        >  1:368250/1‑140 (MQ=255)
                               cgcgAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTAcc                                                                                                       >  2:376818/1‑140 (MQ=255)
                                      gaaagaaaTCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCg                                                                                                >  1:60283/1‑140 (MQ=255)
                                      gaaagaaaTCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGCTCTACGGTATCTGCGTAGGCTTTACCCGCATCg                                                                                                >  2:1047405/1‑140 (MQ=255)
                                            aaTCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTa                                                                                          <  2:477320/140‑1 (MQ=255)
                                            aaTCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGCTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTa                                                                                          <  1:1047405/140‑1 (MQ=255)
                                              tCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACTCGCATCGGCGTTAAt                                                                                        >  1:161307/1‑140 (MQ=255)
                                                     aTGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCgaga                                                                                 >  2:712432/1‑140 (MQ=255)
                                                       gCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAAt                                                                               <  1:712432/140‑1 (MQ=255)
                                                       gCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAAt                                                                               <  2:1063182/140‑1 (MQ=255)
                                                         cATAACTTATCCTCCGAACAAGGTTTAGAGGAAGCCGCTCTACTCTGCTTCAATAAAGCGGAAAGGACGTTCGTCTCCCAGCACACGGTCTACGGTATCTGGGTAGGCTTCACCCGCACCGGCGGTAATGTCGAGAATGa                                                                             <  2:751887/140‑1 (MQ=255)
                                                         cATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCTCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGa                                                                             <  2:1215067/140‑1 (MQ=255)
                                                           tAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGAcc                                                                           >  1:539389/1‑140 (MQ=255)
                                                           tAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGAc                                                                            <  2:922881/139‑1 (MQ=255)
                                                           tAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGAc                                                                            >  1:922881/1‑139 (MQ=255)
                                                              cTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGt                                                                        <  2:469857/140‑1 (MQ=255)
                                                                 aTCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCa                                                                     >  2:502786/1‑140 (MQ=255)
                                                                  tcctccGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCAc                                                                    >  2:1002573/1‑140 (MQ=255)
                                                                   cctccGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCAcc                                                                   >  2:153686/1‑140 (MQ=255)
                                                                       cGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCa                                                                     >  1:8731/1‑134 (MQ=255)
                                                                       cGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCa                                                                     <  2:8731/134‑1 (MQ=255)
                                                                       cGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTgg                                                               >  2:1002846/1‑140 (MQ=255)
                                                                       cGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTgg                                                               >  2:335643/1‑140 (MQ=255)
                                                                       cGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTgg                                                               >  2:166609/1‑140 (MQ=255)
                                                                         aaCAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGtt                                                             >  1:1166839/1‑140 (MQ=255)
                                                                             aGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTagag                                                         <  1:376818/140‑1 (MQ=255)
                                                                               cGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGgc                                                       <  2:60283/140‑1 (MQ=255)
                                                                                gTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGgcg                                                      <  1:502786/140‑1 (MQ=255)
                                                                                  ttGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGTGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGgcgcg                                                    <  2:1120129/140‑1 (MQ=255)
                                                                                  ttGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGgcgcg                                                    <  2:1215156/140‑1 (MQ=255)
                                                                                            cTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgat                                          <  2:1196461/140‑1 (MQ=255)
                                                                                            cTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgat                                          <  2:1166839/140‑1 (MQ=255)
                                                                                              ttcttcTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattg                                        <  1:1082992/140‑1 (MQ=255)
                                                                                              ttcttcTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattg                                        <  2:1268933/140‑1 (MQ=255)
                                                                                              ttcttcTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattg                                        <  1:1224093/140‑1 (MQ=255)
                                                                                               tcttctcttcTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattga                                       >  1:1176416/1‑140 (MQ=255)
                                                                                               tcttctcttcTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattga                                       <  2:282232/140‑1 (MQ=255)
                                                                                                cttctcttctTCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattgat                                      <  1:335643/140‑1 (MQ=255)
                                                                                                     cttcttCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattgat                                      >  2:756365/1‑135 (MQ=255)
                                                                                                     cttcttCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattgat                                      <  1:756365/135‑1 (MQ=255)
                                                                                                     cttcttCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCctct                                 >  2:414430/1‑140 (MQ=255)
                                                                                                     cttcttCAATGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCctct                                 <  1:166609/140‑1 (MQ=255)
                                                                                                            aaTGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCa                          <  1:414430/140‑1 (MQ=255)
                                                                                                              tGAAGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACg                        <  1:1002846/140‑1 (MQ=255)
                                                                                                                aaGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattg                                        <  2:694360/122‑1 (MQ=255)
                                                                                                                aaGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACtgattg                                        >  1:694360/1‑122 (MQ=255)
                                                                                                                aaGCGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGcc                      >  2:599231/1‑140 (MQ=255)
                                                                                                                   cGGAAAGGACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCcgac                   >  2:1102168/1‑140 (MQ=255)
                                                                                                                          gACGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTg            >  2:828896/1‑140 (MQ=255)
                                                                                                                           aCGTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGa           <  1:1102168/140‑1 (MQ=255)
                                                                                                                             gTTCTTCTCCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGATg         >  1:233662/1‑140 (MQ=255)
                                                                                                                                   ctcCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGATGCGCAgg   <  2:1199617/140‑1 (MQ=255)
                                                                                                                                   ctcCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGATGCGCAgg   <  1:1021592/140‑1 (MQ=255)
                                                                                                                                    tcCCAGCAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGATGCGCAGGa  >  1:793669/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TTCTTTTGCAATGTTGGCTGTGTTTTTCTTCCGCGAGAGAAAGAAATCGAGTAATGCCATAACTTATCCTCCGAACAAGCGTTTGAGGAAGCCTTTCTTCTCTTCTTCAATGAAGCGGAAAGGACGTTCTTCTCCCAACAGACGTTCTACGGTATCTGCGTAGGCTTTACCCGCATCGGCGTTAATGTCGAGAATGACCGGTTCACCCTGGTTAGAGGCGCGCAATACTGATTGATCCTCTGGGATCACGCCGACGAGTTTGATGCGCAGGA  >  NC_000913/1224486‑1224757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A