Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 140 77.1 2730754 94.9% 2591485 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,279,364 A→G intergenic (+16/‑500) narK → / → narG nitrate:nitrite antiporter NarK/nitrate reductase A subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,279,3640AG100.0% 256.0 / NA 71intergenic (+16/‑500)narK/narGnitrate:nitrite antiporter NarK/nitrate reductase A subunit alpha
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/35);  total (36/35)

GTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCG  >  NC_000913/1279228‑1279497
                                                                                                                                        |                                                                                                                                     
gTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCtt                                                                                                                                    <  1:814652/140‑1 (MQ=255)
gTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATCTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCtt                                                                                                                                    <  2:1185237/140‑1 (MQ=255)
 tttGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCtt                                                                                                                                    <  1:623434/139‑1 (MQ=255)
 tttGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCtt                                                                                                                                    >  2:623434/1‑139 (MQ=255)
 tttGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTc                                                                                                                                   >  1:1253911/1‑140 (MQ=255)
             cTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACAtgtg                                                                                                                       >  1:864460/1‑140 (MQ=255)
             cTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACAtgtg                                                                                                                       >  1:543139/1‑140 (MQ=255)
                gCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGtgctg                                                                                                                    <  1:89952/140‑1 (MQ=255)
                    tAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTgctgcggc                                                                                                                <  2:667737/140‑1 (MQ=255)
                     aaCGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGtgctg                                                                                                                    <  2:890390/135‑1 (MQ=255)
                     aaCGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGtgctg                                                                                                                    >  1:890390/1‑135 (MQ=255)
                     aaCGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTgctgcggct                                                                                                               >  1:1137858/1‑140 (MQ=255)
                       cGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTgctgcggctgc                                                                                                             <  2:654783/140‑1 (MQ=255)
                        gggTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTgctgcggctgcg                                                                                                            <  1:206210/140‑1 (MQ=255)
                          gTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGtt                                                                                                          >  1:811414/1‑140 (MQ=255)
                          gTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGtt                                                                                                          >  1:1134659/1‑140 (MQ=255)
                                   tCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCAccc                                                                                                 <  1:1128037/140‑1 (MQ=255)
                                      gcgcAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAg                                                                                              <  2:1282284/140‑1 (MQ=255)
                                       cgcAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGTTTCGGGTTACATGTgctgcggctgcg                                                                                                            >  1:214283/1‑125 (MQ=255)
                                       cgcAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGTTTCGGGTTACATGTgctgcggctgcg                                                                                                            <  2:214283/125‑1 (MQ=255)
                                          aaTGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCac                                                                                          <  2:811414/140‑1 (MQ=255)
                                           aTGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCact                                                                                         <  1:1126509/140‑1 (MQ=255)
                                             gAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCactta                                                                                       <  1:987480/140‑1 (MQ=255)
                                             gAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCactta                                                                                       <  1:1125335/140‑1 (MQ=255)
                                                ggTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCacttactt                                                                                    <  2:712301/140‑1 (MQ=255)
                                                  tATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa                                                                                  <  2:1179665/140‑1 (MQ=255)
                                                          aTTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTc                                                                          >  2:1360074/1‑140 (MQ=255)
                                                              tCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTgg                                                                      >  1:718818/1‑140 (MQ=255)
                                                               cTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTggg                                                                     <  1:1282850/140‑1 (MQ=255)
                                                                tataTCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGa                                                                    <  1:849714/140‑1 (MQ=255)
                                                                       ccTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattcattc                                                             >  2:1057788/1‑140 (MQ=255)
                                                                         tGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCAc                                                           >  2:251984/1‑140 (MQ=255)
                                                                          gCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACt                                                          >  1:1195175/1‑140 (MQ=255)
                                                                            gTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTg                                                        <  2:1241348/140‑1 (MQ=255)
                                                                               gTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTgccg                                                     <  2:1134659/140‑1 (MQ=255)
                                                                                     aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTcc                                               >  1:518608/1‑140 (MQ=255)
                                                                                     aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTcc                                               >  1:41328/1‑140 (MQ=255)
                                                                                     aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTcc                                               >  1:140292/1‑140 (MQ=255)
                                                                                     aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTcc                                               >  2:881552/1‑140 (MQ=255)
                                                                                         gggCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTa                                           <  2:140292/140‑1 (MQ=255)
                                                                                          ggCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaa                                          >  1:1153382/1‑140 (MQ=255)
                                                                                               tataTGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         >  2:966984/1‑136 (MQ=255)
                                                                                               tataTGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         <  1:966984/136‑1 (MQ=255)
                                                                                                atatGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGaa                                    <  2:1137858/140‑1 (MQ=255)
                                                                                                 tatGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAAt                                   >  2:866632/1‑140 (MQ=255)
                                                                                                    ggTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAAcc                                       <  2:1038311/133‑1 (MQ=255)
                                                                                                    ggTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAAcc                                       >  1:1038311/1‑133 (MQ=255)
                                                                                                    ggTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATtat                                >  2:829980/1‑140 (MQ=255)
                                                                                                    ggTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATtat                                >  1:1146718/1‑140 (MQ=255)
                                                                                                     gTCGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATtata                               <  1:866632/140‑1 (MQ=255)
                                                                                                       cGGCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATtatata                             <  2:718818/140‑1 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         <  1:775721/126‑1 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         <  2:893240/126‑1 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         <  1:812660/126‑1 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         <  2:1351422/126‑1 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         >  1:893240/1‑126 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         >  2:812660/1‑126 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         >  1:1351422/1‑126 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                         >  2:775721/1‑126 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                           >  1:1030823/1‑140 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                           >  1:352079/1‑140 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                           >  2:563547/1‑140 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                           >  2:442511/1‑140 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                           >  2:359825/1‑140 (MQ=255)
                                                                                                         gCATTCTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                           >  2:200216/1‑140 (MQ=255)
                                                                                                              cTAAAAAATAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTaaa                      <  2:1030823/140‑1 (MQ=255)
                                                                                                                 aaaaaTAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAata                   <  2:543139/140‑1 (MQ=255)
                                                                                                                    aaTAAACCGTTACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATAttt                >  1:609488/1‑140 (MQ=255)
                                                                                                                              tACTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCtt      >  1:266565/1‑140 (MQ=255)
                                                                                                                                cTCGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTg    <  1:359825/140‑1 (MQ=255)
                                                                                                                                  cGTCATGCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgcg  <  1:200216/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
GTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCG  >  NC_000913/1279228‑1279497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A