Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	132	43.0	1464274	99.1%	1451095	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,198,219	(G)_6→7	coding (19/705 nt)	ymfE ←	e14 prophage; uncharacterized protein YmfE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,198,213	1	.	G	100.0%	211.0 / NA	60	K9Q (AAA→CAA)	ymfE	e14 prophage; uncharacterized protein YmfE
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (29/31); total (29/31)

TCTTTAATAGGTGGGACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑GGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTATCTGTTCAGGCTGACCTAGCTTCGC  >  NC_000913/1198077‑1198349

tCTTTAATAGGTGGGACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑ggg                                                                                                                                       <  1:626012/140‑1 (MQ=255)

tCTTTAATAGGTGGGACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑ggg                                                                                                                                       <  2:278974/140‑1 (MQ=255)

 cTTTAATAGGGGGGACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑gggg                                                                                                                                      >  1:263088/1‑140 (MQ=255)

          gTGGGACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGaa                                                                                                                              >  2:441613/1‑140 (MQ=255)

            gggACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACa                                                                                                                            >  1:221054/1‑140 (MQ=255)

            gggACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑gggggggttc                                                                                                                                >  1:113098/1‑131 (MQ=255)

            gggACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑gggggggttc                                                                                                                                <  2:113098/135‑5 (MQ=255)

              gACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACata                                                                                                                          >  2:574969/1‑140 (MQ=255)

              gACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACata                                                                                                                          >  2:385816/1‑140 (MQ=255)

              gACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTCGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑gggggggtt                                                                                                                                 <  1:496129/132‑4 (MQ=255)

              gACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTCGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑gggggggtt                                                                                                                                 >  2:496129/1‑129 (MQ=255)

                   aCTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATattatt                                                                                                                     >  1:293815/1‑140 (MQ=255)

                        gttggtAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCt                                                                                                                >  2:52071/1‑140 (MQ=255)

                           ggtAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAg                                                                                                             >  2:625861/1‑140 (MQ=255)

                             tAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTc                                                                                                           >  2:45183/1‑140 (MQ=255)

                              aaTGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          <  2:416750/140‑1 (MQ=255)

                              aaTGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          <  2:293815/140‑1 (MQ=255)

                              aaTGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          <  2:647056/140‑1 (MQ=255)

                              aaTGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          <  2:10801/140‑1 (MQ=255)

                              aaTGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          <  1:441613/140‑1 (MQ=255)

                                  ttattaAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGATAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTc                                                                                                                    <  1:636600/126‑1 (MQ=255)

                                  ttattaAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTc                                                                                                                    >  2:636600/1‑126 (MQ=255)

                                   tattaAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCtt                                                                                                     <  2:263088/140‑1 (MQ=255)

                                   tattaAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCtt                                                                                                     <  1:45183/140‑1 (MQ=255)

                                     ttaAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTCTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGt                                                                                                            <  1:453096/131‑1 (MQ=255)

                                     ttaAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTCTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGt                                                                                                            >  2:453096/1‑131 (MQ=255)

                                      taAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGt                                                                                                            <  1:106093/130‑1 (MQ=255)

                                      taAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGt                                                                                                            >  2:106093/1‑130 (MQ=255)

                                        aaGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                <  2:630259/140‑1 (MQ=255)

                                        aaGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                <  1:218663/140‑1 (MQ=255)

                                        aaGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                <  2:279151/140‑1 (MQ=255)

                                         aGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGAt                                                                                               <  2:221054/140‑1 (MQ=255)

                                           ggATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAg                                                                                             >  1:494307/1‑140 (MQ=255)

                                            gATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCGACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          >  1:391269/1‑126 (MQ=255)

                                            gATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCGACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCa                                                                                                          <  2:391269/126‑1 (MQ=255)

                                             aTGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAgtg                                                                                           >  2:238232/1‑140 (MQ=255)

                                             aTGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAgtg                                                                                           >  2:706011/1‑140 (MQ=255)

                                              tGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAgtgt                                                                                          <  1:706011/140‑1 (MQ=255)

                                              tGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAgtgt                                                                                          <  1:52071/140‑1 (MQ=255)

                                               gTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                >  2:712067/1‑133 (MQ=255)

                                               gTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                >  1:239610/1‑133 (MQ=255)

                                               gTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                <  1:712067/133‑1 (MQ=255)

                                               gTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGa                                                                                                <  2:239610/133‑1 (MQ=255)

                                                     gTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTa                                                                                   >  1:191206/1‑140 (MQ=255)

                                                         aTAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAatat                                                                               <  2:494307/140‑1 (MQ=255)

                                                               aGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATttaatt                                                                         <  1:620555/140‑1 (MQ=255)

                                                                      tGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTa                                                                                   <  1:568712/123‑1 (MQ=255)

                                                                      tGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTa                                                                                   >  2:568712/1‑123 (MQ=255)

                                                                      tGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTc                                                                  >  2:182516/1‑140 (MQ=255)

                                                                       gCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCa                                                                 <  1:238232/140‑1 (MQ=255)

                                                                           tatatTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATtat                                                             >  2:422516/1‑140 (MQ=255)

                                                                            atatTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATtata                                                            <  1:422516/140‑1 (MQ=255)

                                                                                tAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAgtg                                                                    <  2:660009/128‑1 (MQ=255)

                                                                                tAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAgtg                                                                    >  1:660009/1‑128 (MQ=255)

                                                                                   cGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACtttt                                                     >  2:716302/1‑140 (MQ=255)

                                                                                       tttAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGt                                                 >  1:719652/1‑140 (MQ=255)

                                                                                       tttAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGt                                                 >  2:350312/1‑140 (MQ=255)

                                                                                       tttAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGt                                                 >  1:73226/1‑140 (MQ=255)

                                                                                       tttAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGt                                                 >  1:514538/1‑140 (MQ=255)

                                                                                                         tGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAAttttt                               <  1:574969/140‑1 (MQ=255)

                                                                                                         tGAAGTTTAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATCATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAAttttt                               <  1:385545/140‑1 (MQ=255)

                                                                                                              tttAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAAttttt                               >  1:385523/1‑135 (MQ=255)

                                                                                                              tttAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAAttttt                               <  2:385523/135‑1 (MQ=255)

                                                                                                              tttAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTAt                          <  1:625861/140‑1 (MQ=255)

                                                                                                              tttAGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTAt                          <  1:182516/140‑1 (MQ=255)

                                                                                                                 aGGCAACATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTATCTg                       >  2:460709/1‑140 (MQ=255)

                                                                                                                      aCATTTCATTATAATTTTTGGGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTATCTGTTCAg                  <  1:426590/140‑1 (MQ=255)

                                                                                                                                  atttttg‑GGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTATCTGTTCAGGCTGACCTAGCtt     <  2:719652/138‑1 (MQ=255)

                                                                                                                                     tttg‑GGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTATCTGTTCAGGCTGACCTAGCTTCGc  <  2:191206/140‑1 (MQ=255)

TCTTTAATAGGTGGGACATACTTGGTTGGTAATGTTATTAAAGGGATGTATTCGTAAATAACTAGAAGTATGCAATATATTAGCGTATTTAAGAAAGTTGCTTTATGAAGTTTAGGCAACATTTCATTATAATTTTT‑GGGGGGTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGTCATTATATACTTTTCAGTAGGTTAGTTACAATTTTTTGTATCTGTTCAGGCTGACCTAGCTTCGC  >  NC_000913/1198077‑1198349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A