Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F28 I1 R1	142	96.2	3256224	98.9%	3220405	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,220,698	A→G	pseudogene (1098/2648 nt)	ycgH →	putative transporter component, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,220,698	0	A	G	100.0%	360.8 / NA	99	pseudogene (1098/2648 nt)	ycgH	putative transporter component, N‑terminal fragment
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (58/41); total (58/41)

Only 100 of 101 total aligned reads displayed.

CCAAAATAGCACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACT  >  NC_000913/1220562‑1220833

ccAAAATAGCACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGt                                                                                                                                      <  1:603330/140‑1 (MQ=255)

         cACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAAc                                                                                                                             <  2:462552/140‑1 (MQ=255)

         cACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAAc                                                                                                                             >  1:462552/1‑140 (MQ=255)

         cACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAAc                                                                                                                             >  1:340969/1‑140 (MQ=255)

         cACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAAc                                                                                                                             >  1:33404/1‑140 (MQ=255)

                 aGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTc                                                                                                                     >  2:745745/1‑140 (MQ=255)

                    gtTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTc                                                                                                                  <  2:381401/140‑1 (MQ=255)

                    gtTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTc                                                                                                                  <  2:658154/140‑1 (MQ=255)

                      tGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCg                                                                                                                >  2:1132957/1‑140 (MQ=255)

                      tGAACTTTCAAGTGCTTTGGATAGTATTCATGTTAACAAAACTACAACGGATATAAGTATCCTTAATCGAAGTATTATCACACCTGGAAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCg                                                                                                                >  2:1409885/1‑140 (MQ=255)

                        aaCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTc                                                                                                                  <  1:1074381/136‑1 (MQ=255)

                        aaCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTc                                                                                                                  >  2:1074381/1‑136 (MQ=255)

                        aaCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAc                                                                                                              >  2:1591627/1‑140 (MQ=255)

                        aaCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAc                                                                                                              >  2:443770/1‑140 (MQ=255)

                        aaCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAc                                                                                                              >  1:407263/1‑140 (MQ=255)

                        aaCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAc                                                                                                              >  1:1048595/1‑140 (MQ=255)

                         aCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAct                                                                                                             <  1:1409205/140‑1 (MQ=255)

                         aCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAct                                                                                                             <  1:1591627/140‑1 (MQ=255)

                         aCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAct                                                                                                             <  2:1048595/140‑1 (MQ=255)

                         aCTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGAct                                                                                                             <  1:1132957/140‑1 (MQ=255)

                           tttCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGActct                                                                                                           <  2:856984/140‑1 (MQ=255)

                             tCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTAt                                                                                                         >  1:1549570/1‑140 (MQ=255)

                                  tGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTaa                                                                                                    >  1:93121/1‑140 (MQ=255)

                                    cTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGActc                                                                                                            >  1:1524916/1‑130 (MQ=255)

                                    cTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGActc                                                                                                            <  2:1524916/130‑1 (MQ=255)

                                       tGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGa                                                                                               <  2:669870/140‑1 (MQ=255)

                                       tGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGa                                                                                               <  1:898693/140‑1 (MQ=255)

                                              tATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTa                                                                                        >  2:528372/1‑140 (MQ=255)

                                                   aTGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTc                                                                                   >  2:892337/1‑140 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCa                                                                               <  2:843406/139‑1 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCa                                                                               >  1:843406/1‑139 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAg                                                                              >  2:1097698/1‑140 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAg                                                                              >  1:110545/1‑140 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAg                                                                              >  2:1320696/1‑140 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAg                                                                              >  1:1126800/1‑140 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAg                                                                              >  1:382416/1‑140 (MQ=255)

                                                        aaCAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAg                                                                              >  2:619429/1‑140 (MQ=255)

                                                             aaCTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGca                                                                         >  1:528804/1‑140 (MQ=255)

                                                             aaCTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGca                                                                         <  2:340969/140‑1 (MQ=255)

                                                                tACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACaa                                                                      <  1:619429/140‑1 (MQ=255)

                                                                 aCAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGCGCGACTAAACTCGTCAGCGGcacacc                                                                     <  2:407263/140‑3 (MQ=255)

                                                                        aTGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGc                                                                             <  1:609079/125‑1 (MQ=255)

                                                                        aTGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGc                                                                             >  2:609079/1‑125 (MQ=255)

                                                                        aTGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTg                                                              >  2:868918/1‑140 (MQ=255)

                                                                          gTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGaa                                                            >  2:477881/1‑140 (MQ=255)

                                                                              gTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCtt                                                        <  2:528804/140‑1 (MQ=255)

                                                                              gTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCtt                                                        <  1:443770/140‑1 (MQ=255)

                                                                               tATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCttt                                                       >  2:888640/1‑140 (MQ=255)

                                                                                 tCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAAc                                                                     <  2:583205/124‑1 (MQ=255)

                                                                                 tCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAAc                                                                     >  1:583205/1‑124 (MQ=255)

                                                                                 tCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCa                                                     >  1:1203901/1‑140 (MQ=255)

                                                                                  ccTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTAAAGCTTTCAg                                                    >  1:549657/1‑140 (MQ=255)

                                                                                     tAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGaaa                                                 >  1:707549/1‑140 (MQ=255)

                                                                                      aaTCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGaaaa                                                >  2:1611365/1‑140 (MQ=255)

                                                                                      aaTCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGaaaa                                                >  1:520262/1‑140 (MQ=255)

                                                                                      aaTCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGaaaa                                                >  1:1371025/1‑140 (MQ=255)

                                                                                             gTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATc                                         <  1:892337/140‑1 (MQ=255)

                                                                                               attatCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTg                                       <  1:1097698/140‑1 (MQ=255)

                                                                                                 tatCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGa                                     <  2:1126800/140‑1 (MQ=255)

                                                                                                  atCACACCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGaa                                    >  1:30250/1‑140 (MQ=255)

                                                                                                      cacCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATg                                >  1:1021038/1‑140 (MQ=255)

                                                                                                      cacCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATg                                >  1:721423/1‑140 (MQ=255)

                                                                                                      cacCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATg                                >  1:1007105/1‑140 (MQ=255)

                                                                                                       acCTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGa                               <  2:570774/140‑1 (MQ=255)

                                                                                                        ccTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGaa                              >  1:302064/1‑140 (MQ=255)

                                                                                                         cTGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGaaa                             <  2:1549570/140‑1 (MQ=255)

                                                                                                          tGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAg                            >  2:1135805/1‑140 (MQ=255)

                                                                                                          tGGTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAg                            >  1:1204622/1‑140 (MQ=255)

                                                                                                           ggTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGa                           >  1:651467/1‑140 (MQ=255)

                                                                                                           ggTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGa                           >  1:793006/1‑140 (MQ=255)

                                                                                                           ggTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGa                           >  1:465449/1‑140 (MQ=255)

                                                                                                           ggTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGa                           >  1:87809/1‑140 (MQ=255)

                                                                                                           ggTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGa                           >  1:1594959/1‑140 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATc                                         >  1:35547/1‑125 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATc                                         <  2:35547/125‑1 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGa                                     >  2:1029611/1‑129 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGa                                     <  1:1029611/129‑1 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGa                                     <  2:1482033/129‑1 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGa                                     >  1:1482033/1‑129 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAata                                  >  1:996770/1‑132 (MQ=255)

                                                                                                            gTAATAATGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGAt                          >  2:1107991/1‑140 (MQ=255)

                                                                                                                taatGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACt                      <  1:745745/140‑1 (MQ=255)

                                                                                                                 aatGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTc                     <  2:721423/140‑1 (MQ=255)

                                                                                                                  atGTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTcc                    <  2:1594959/140‑1 (MQ=255)

                                                                                                                    gTTCTGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCgt                  <  2:707549/140‑1 (MQ=255)

                                                                                                                        tGGTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCgttgtt              <  1:868918/140‑1 (MQ=255)

                                                                                                                         ggTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTa             <  2:520262/140‑1 (MQ=255)

                                                                                                                         ggTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTa             >  1:880774/1‑140 (MQ=255)

                                                                                                                         ggTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTa             <  2:1007105/140‑1 (MQ=255)

                                                                                                                         ggTTAATAATACTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTa             >  1:1300819/1‑140 (MQ=255)

                                                                                                                              ataataCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCAt        <  1:477881/140‑1 (MQ=255)

                                                                                                                              ataataCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCAt        <  2:33404/140‑1 (MQ=255)

                                                                                                                               taataCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTa             <  1:127225/134‑1 (MQ=255)

                                                                                                                               taataCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTa             >  2:127225/1‑134 (MQ=255)

                                                                                                                               taataCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATc       >  1:1327331/1‑140 (MQ=255)

                                                                                                                               taataCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATc       >  1:829627/1‑140 (MQ=255)

                                                                                                                                  taCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGa    <  1:723756/140‑1 (MQ=255)

                                                                                                                                  taCTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGa    <  1:888640/140‑1 (MQ=255)

                                                                                                                                    cTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACt  >  2:506271/1‑140 (MQ=255)

                                                                                                                                    cTGGGGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAAACTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACt  >  2:777470/1‑140 (MQ=255)

CCAAAATAGCACTATTAAGTGTTGAACTTTCAAGTGCTTTGGATAGTATTGATGTTAACAAAACTACAACGGATGTAAGTATCCTTAATCGAAGTATTATCACACCTGGTAATAATGTTCTGGTTAATAATACTGGAGGTGACTTAAACATAATTTCGTCCGACTCTATTCTAAATGGAGCGACTAAACTCGTCAGCGGCACAACCACGCTGAAGCTTTCAGAAAATACAATCTGGAATATGAAAGATGACTCCGTTGTTACCCATCTGACT  >  NC_000913/1220562‑1220833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A