Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F13 I1 R1
|
21 |
2440.9 |
80198605 |
99.5% |
79797611 |
141.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,103,657 |
T→C |
T285A (ACA→GCA) |
wbbK ← |
putative lipopolysaccharide biosynthesis protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,103,657 | 0 | T | C | 99.2%
| 10643.2
/ 24.6
| 2550 | T285A (ACA→GCA) | wbbK | putative lipopolysaccharide biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base T (13/6); new base C (1203/1328); total (1216/1334) |
| Fisher's exact test for biased strand distribution p-value = 1.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 2564 total aligned reads displayed.
TAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCATTTTCTGTACCAC > NC_000913/2103510‑2103803
|
taataaGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGctt > 2:17661267/1‑150 (MQ=255)
ataaGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTc < 2:17659137/149‑1 (MQ=255)
ataaGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCt < 2:17659221/150‑1 (MQ=255)
aGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAAc < 2:17659023/150‑1 (MQ=255)
tttAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCt < 1:17659903/150‑1 (MQ=255)
gttAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCt < 2:17658871/149‑1 (MQ=255)
ttAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAAcc > 1:17661333/1‑148 (MQ=255)
taactaacATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAATGGCAATCCCCATGCTTCTAACCTa > 2:17661337/1‑149 (MQ=255)
actaacATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTagag < 1:17658378/150‑1 (MQ=255)
actaacATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTagag < 1:17658132/150‑1 (MQ=255)
aacATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAgg > 2:17661395/1‑148 (MQ=255)
acATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGa > 1:17661399/1‑149 (MQ=255)
cATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACGACGGCAATCCCCATGCTTCTAACCTAGAGGGaaa < 1:17659683/150‑1 (MQ=255)
tCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAaaaca > 1:17661447/1‑149 (MQ=255)
aTCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGaa > 2:17661457/1‑143 (MQ=255)
ttattaGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACtata > 1:17661495/1‑150 (MQ=255)
ttaGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATc > 2:17661533/1‑149 (MQ=255)
taGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCt > 1:17661549/1‑149 (MQ=255)
aaTCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGaaa > 2:17661573/1‑150 (MQ=255)
aTCAAAAAAAGCTTTCTTTTCATAACTACCAAGANTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTATCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAat < 2:17659608/150‑1 (MQ=255)
tCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAata < 2:17659502/150‑1 (MQ=255)
cAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAatat > 1:17661607/1‑150 (MQ=255)
aaaaaaaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAata > 2:17661625/1‑148 (MQ=255)
aaaaaaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtatt < 1:17659828/149‑1 (MQ=255)
aaaaaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtattat < 1:17659063/150‑1 (MQ=255)
aaaaaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtattat < 1:17658846/150‑1 (MQ=255)
aaaaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtattat > 1:17661658/1‑149 (MQ=255)
aaaaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATtata < 2:17657607/150‑1 (MQ=255)
aaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATaa > 2:17661676/1‑149 (MQ=255)
aaGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAAc < 2:17660579/150‑1 (MQ=255)
ctttctttTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACaa > 1:17661709/1‑149 (MQ=255)
tctttTCATAACTACCAATAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAAt < 2:17659786/147‑1 (MQ=255)
tctttTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGAt > 2:17661733/1‑150 (MQ=255)
tttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGa > 1:17661759/1‑150 (MQ=255)
ttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATc < 1:17655648/147‑1 (MQ=255)
ttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATc < 1:17657707/147‑1 (MQ=255)
tCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAtt > 2:17661793/1‑150 (MQ=255)
cATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAttt > 1:17661803/1‑150 (MQ=255)
tAACTACCAATAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGANAACAAACTATATCTGAAATATTATAACAATGATCGAttttt > 1:17661845/1‑150 (MQ=255)
aaCTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCGCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAGATTATAACAATGATCGAtttttt > 2:17661856/1‑150 (MQ=255)
aCTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAtttttt < 2:17660271/149‑1 (MQ=255)
tACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATCATCGATTTTTTCtt > 1:17661892/1‑150 (MQ=255)
ccAAGAGTTTCTTTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATATg > 2:17661910/1‑118 (MQ=255)
cAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTAt < 1:17659554/150‑1 (MQ=255)
aaGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATc > 1:17661937/1‑150 (MQ=255)
gagTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATcc > 2:17661962/1‑149 (MQ=255)
gagTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCa < 2:17658180/150‑1 (MQ=255)
gTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAg < 1:17659465/150‑1 (MQ=255)
ttCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTa > 1:17661992/1‑150 (MQ=255)
ttCTCTAGTAAATGGGAAATCTGATGCTAATACCCACGTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATc < 2:17659420/108‑1 (MQ=255)
tctcTAGTAAATGGGAAATCTGATGCTAATACCCACATACCACGCTCTTTTGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTatat < 2:17658591/106‑1 (MQ=255)
ctAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTAccc > 2:17662025/1‑149 (MQ=255)
tAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTAccc > 1:17662034/1‑148 (MQ=255)
ttAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTAccc < 1:17659979/145‑1 (MQ=255)
gTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAg < 1:17660050/149‑1 (MQ=255)
aaaTGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACaa > 2:17662072/1‑115 (MQ=255)
aTGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAAt > 1:17662089/1‑150 (MQ=255)
aTGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAAt < 1:17660231/150‑1 (MQ=255)
gAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAAc < 2:17660011/150‑1 (MQ=255)
aaaTCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACa > 2:17662121/1‑150 (MQ=255)
tGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATc > 2:17662160/1‑150 (MQ=255)
tGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATc > 1:17662164/1‑150 (MQ=255)
aTGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTa < 1:17659757/146‑1 (MQ=255)
aTGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTAt < 1:17659614/147‑1 (MQ=255)
tGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCa < 1:17660403/149‑1 (MQ=255)
aaTACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCt > 2:17662213/1‑150 (MQ=255)
aaTACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCt > 1:17662213/1‑150 (MQ=255)
aTACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCtt < 1:17658581/150‑1 (MQ=255)
tACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTc < 1:17659301/150‑1 (MQ=255)
tACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTc < 2:17659692/150‑1 (MQ=255)
cccACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCt < 2:17660161/149‑1 (MQ=255)
cccACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCt < 1:17660611/149‑1 (MQ=255)
cccACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCt < 1:17659376/149‑1 (MQ=255)
aCTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACACTGATCGAtgtt > 1:17662267/1‑100 (MQ=255)
aCTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCATTCCTTCTGc > 2:17662263/1‑148 (MQ=255)
aCTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCaa < 2:17660432/150‑1 (MQ=255)
cTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGa < 1:17660847/150‑1 (MQ=255)
tCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACACGAGGAAATGAACATTAt > 2:17662311/1‑128 (MQ=255)
gCTCTTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGataa > 1:17662318/1‑150 (MQ=255)
ctctTTAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGataat < 1:17659156/150‑1 (MQ=255)
tttAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAatata > 2:17662352/1‑150 (MQ=255)
tAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAatat < 1:17659252/147‑1 (MQ=255)
tAGCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATAtt > 1:17662380/1‑150 (MQ=255)
tgCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGACGTAAAACAAACTATGTCTGAAATATTATAACa < 2:17659332/71‑1 (MQ=255)
gCTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATAtttt < 2:17658764/150‑1 (MQ=255)
cTTCAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATAtttt > 2:17662411/1‑149 (MQ=255)
cAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGaaa < 2:17658432/57‑1 (MQ=255)
cAGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCa > 1:17662428/1‑149 (MQ=255)
aGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCAt < 2:17660868/149‑1 (MQ=255)
aGACAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCAt < 1:17658727/149‑1 (MQ=255)
gACAACGGCGATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATAc < 1:17658940/150‑1 (MQ=255)
cAACGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACg > 2:17662455/1‑149 (MQ=255)
aCGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCAt > 1:17662483/1‑150 (MQ=255)
aCGGCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCAt < 1:17660509/150‑1 (MQ=255)
ggCAATCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCAttt < 1:17660142/150‑1 (MQ=255)
aaTCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCATTTTCt < 1:17661136/150‑1 (MQ=255)
aaTCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCATTTTCt > 2:17662511/1‑150 (MQ=255)
aaTCCCCATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCATTTTCt < 1:17660312/150‑1 (MQ=255)
ccccATGCTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCATTTTCTGTa > 1:17662540/1‑150 (MQ=255)
cATGCTTCTAACCTAGAGTGAAAACAAACTATATCTGAAATATTATAACAATGATCGAttttt < 2:17659884/63‑1 (MQ=255)
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TAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAAGTACCCGAGGAAATGAACATTATCCAGTCCTTCTGCAAGACTGATAATATATTTTGCATACGCATTTTCTGTACCAC > NC_000913/2103510‑2103803
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
