Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 21 2440.9 80198605 99.5% 79797611 141.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,944,117 C→T noncoding (414/2904 nt) rrlC → 23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,944,1170CT99.7% 4698.0 / 1.6 1420noncoding (414/2904 nt)rrlC23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base C (4/1);  new base T (644/771);  total (648/772)
Fisher's exact test for biased strand distribution p-value = 1.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.26e-01

Only 100 of 1420 total aligned reads displayed.

CCCAGAGCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAG  >  NC_000913/3943970‑3944209
                                                                                                                                                   |                                                                                            
cccAGAGCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAACAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCAt                                                                                            >  1:33785470/1‑150 (MQ=38)
cccAGAGCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTAt                                                                                            >  2:33785471/1‑150 (MQ=38)
   agagCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTAtcct                                                                                         <  2:33783621/150‑1 (MQ=255)
     agCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTAtcctcc                                                                                       <  1:33783388/150‑1 (MQ=255)
     agCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTAtcctc                                                                                        >  1:33785504/1‑149 (MQ=255)
       ccTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTAtcctcc                                                                                       >  2:33785519/1‑148 (MQ=255)
       ccTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCaa                                                                                     <  1:33782162/150‑1 (MQ=38)
       ccTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCa                                                                                      <  1:33784435/149‑1 (MQ=255)
        cTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAg                                                                                    >  1:33785529/1‑150 (MQ=255)
           aaTCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAgg                                                                                   <  1:33781698/148‑1 (MQ=255)
           aaTCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGc                                                                                  <  2:33783692/149‑1 (MQ=255)
            aTCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCt                                                                                 >  1:33785559/1‑149 (MQ=38)
             tCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTa                                                                                >  2:33785562/1‑149 (MQ=255)
                gTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTa                                                                                <  2:33782956/146‑1 (MQ=38)
                gTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAAt                                                                             <  1:33781071/149‑1 (MQ=38)
                gTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATa                                                                            >  1:33785585/1‑150 (MQ=255)
                gTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATa                                                                            <  2:33782315/150‑1 (MQ=255)
                  aTGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACt                                                                          >  2:33785596/1‑150 (MQ=37)
                     tgtgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTcc                                                                        <  1:33782419/149‑1 (MQ=25)
                     tgtgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCct                                                                       >  1:33785614/1‑150 (MQ=25)
                       tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctga                                                                     <  1:33783196/150‑1 (MQ=25)
                       tgtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctg                                                                      <  1:33783538/149‑1 (MQ=25)
                        gtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTATACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgac                                                                    >  2:33785634/1‑150 (MQ=25)
                        gtTAGTGGAAGCGTCTGGAAAGGCGCGCGATACACGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctga                                                                     >  1:33785636/1‑149 (MQ=255)
                         ttAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAATAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgact                                                                   <  2:33783876/150‑1 (MQ=255)
                         ttAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgact                                                                   <  1:33783943/150‑1 (MQ=25)
                         ttAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgac                                                                    <  2:33783584/149‑1 (MQ=25)
                           aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgactg                                                                  <  1:33782598/149‑1 (MQ=25)
                           aGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgactg                                                                  <  1:33783012/149‑1 (MQ=25)
                            gTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCaac                                                                                    >  1:33785662/1‑129 (MQ=37)
                            gTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgactga                                                                 <  1:33783254/149‑1 (MQ=25)
                              ggAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGAcc                                                               >  2:33785669/1‑149 (MQ=25)
                                aaGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCctgac                                                                    <  2:33783951/142‑1 (MQ=25)
                                 aGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGa                                                             >  2:33785691/1‑148 (MQ=25)
                                   cGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGt                                                         >  1:33785698/1‑150 (MQ=25)
                                     tCTGGAAAGGCGCGCTATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATa                                                           <  1:33784301/146‑1 (MQ=25)
                                     tCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCtgactgac                                                                <  2:33782725/141‑1 (MQ=25)
                                      cTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGaa                                                      >  2:33785730/1‑150 (MQ=25)
                                      cTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGaa                                                      >  1:33785729/1‑150 (MQ=25)
                                         gAAAGGCGCGCGATACAGGNTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAAc                                                     >  2:33785757/1‑148 (MQ=25)
                                          aaaGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAg                                                  <  1:33783453/150‑1 (MQ=25)
                                          aaaGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAg                                                  <  1:33784115/150‑1 (MQ=25)
                                           aaGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTCGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAg                                                  >  1:33785767/1‑149 (MQ=255)
                                            aGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTa                                                <  1:33784209/150‑1 (MQ=25)
                                              gcgcgcGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTAc                                               <  2:33783268/149‑1 (MQ=25)
                                               cgcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACt                                                                          >  2:33785786/1‑121 (MQ=25)
                                               cgcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCg                                             <  2:33783337/150‑1 (MQ=25)
                                                gcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGt                                            >  1:33785792/1‑150 (MQ=25)
                                                gcgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGt                                            <  2:33784223/150‑1 (MQ=21)
                                                 cgcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTg                                           <  2:33784051/150‑1 (MQ=25)
                                                  gcgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGt                                            >  1:33785811/1‑148 (MQ=25)
                                                  gcgATAAAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCg                                             <  2:33782020/147‑1 (MQ=25)
                                                   cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAGGGCTAAATACTCCTGACTGACCGAtcg                                                          >  2:33785828/1‑131 (MQ=255)
                                                   cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAg                                         <  1:33783797/150‑1 (MQ=25)
                                                   cgATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAg                                         <  1:33782320/150‑1 (MQ=25)
                                                     aTACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAgg                                        >  1:33785841/1‑149 (MQ=25)
                                                      tACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAggg                                       >  2:33785851/1‑149 (MQ=25)
                                                       aCAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGa                                      >  1:33785866/1‑149 (MQ=25)
                                                          gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGt                                            >  2:33785890/1‑140 (MQ=37)
                                                          gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAgg                                  <  1:33783723/150‑1 (MQ=25)
                                                          gggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAg                                   <  2:33784887/149‑1 (MQ=25)
                                                           ggTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGc                                 <  1:33783647/150‑1 (MQ=25)
                                                             tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCg                                >  1:33785898/1‑149 (MQ=25)
                                                             tGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGa                               <  1:33784586/150‑1 (MQ=25)
                                                               aCAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaa                              >  2:33785914/1‑149 (MQ=25)
                                                                 aGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaa                              >  1:33785931/1‑147 (MQ=25)
                                                                  gCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaaaa                            >  2:33785943/1‑148 (MQ=25)
                                                                   ccccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGaaa                             <  2:33783795/146‑1 (MQ=21)
                                                                    cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAc                        <  1:33783105/150‑1 (MQ=25)
                                                                    cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAc                        <  1:33782903/150‑1 (MQ=25)
                                                                    cccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAc                        >  1:33785961/1‑150 (MQ=25)
                                                                    cccGTACACAAAAATGCACAGATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCg                                                              <  2:33782529/112‑1 (MQ=255)
                                                                     ccGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcc                       <  1:33783597/150‑1 (MQ=25)
                                                                      cggacacAAAAATGCACATATTGTGAGCTCGATGAGTAGTGCGGGACACGTTGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATa                                                           <  2:33783021/110‑1 (MQ=11)
                                                                      cGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAccc                      >  2:33785970/1‑150 (MQ=25)
                                                                       gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcccc                     <  1:33784013/150‑1 (MQ=25)
                                                                       gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcccc                     <  2:33784338/150‑1 (MQ=25)
                                                                       gTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAAcccc                     >  1:33785988/1‑150 (MQ=25)
                                                                         acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAg                                                  <  2:33781162/119‑1 (MQ=25)
                                                                         acacAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCgg                   >  2:33786003/1‑150 (MQ=25)
                                                                          cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTg                                                        >  2:33786027/1‑112 (MQ=25)
                                                                          cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGt                                            <  2:33782859/124‑1 (MQ=25)
                                                                          cacaAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc                  >  1:33786018/1‑150 (MQ=21)
                                                                            caAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAgg                                        >  2:33786050/1‑126 (MQ=37)
                                                                             aaaaaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAg               >  1:33786053/1‑150 (MQ=25)
                                                                                aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAggg             >  1:33786080/1‑149 (MQ=25)
                                                                                aaTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGCGACTATCCTCCAAGGCTAAATACTCttgactgag                                                                >  2:33786088/1‑97 (MQ=11)
                                                                                 aTGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGa           <  1:33782772/150‑1 (MQ=25)
                                                                                  tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAg          <  2:33784141/150‑1 (MQ=25)
                                                                                  tGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAg          <  1:33783317/150‑1 (MQ=25)
                                                                                    cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATGCTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGt         >  1:33786108/1‑149 (MQ=25)
                                                                                    cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTg        <  2:33784503/150‑1 (MQ=21)
                                                                                    cacaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTg        <  1:33784797/150‑1 (MQ=21)
                                                                                     acaTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTg        >  2:33786111/1‑149 (MQ=21)
                                                                                      caTATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGaa                         <  2:33783364/131‑1 (MQ=18)
                                                                                       atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAggg             >  2:33786141/1‑142 (MQ=17)
                                                                                       atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGaa      >  1:33786135/1‑149 (MQ=17)
                                                                                       atatTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGa       <  2:33783129/148‑1 (MQ=17)
                                                                                          ttGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGc                  <  2:33783458/134‑1 (MQ=11)
                                                                                          ttGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACTATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAg  <  1:33783868/150‑1 (MQ=11)
                                                                                                                                                   |                                                                                            
CCCAGAGCCTGAATCAGTATGTGTGTTAGTGGAAGCGTCTGGAAAGGCGCGCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGTGAAAAAG  >  NC_000913/3943970‑3944209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A