Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I1 R1 28 562.2 19051950 96.7% 18423235 140.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,638,793 A→G T206A (ACC→GCC)  creD → putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,638,7930AG99.4% 2165.4 / ‑0.7 523T206A (ACC→GCC) creDputative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (2/1);  new base G (244/275);  total (247/276)
Fisher's exact test for biased strand distribution p-value = 6.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

Only 100 of 523 total aligned reads displayed.

AAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTACCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAGGCGCACTGGCAAAGCAGC  >  NC_000913/4638647‑4638939
                                                                                                                                                  |                                                                                                                                                  
aaGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGTACCTGAAGCTGAATATGACCCTGAATTTAAGCGATGCCg                                                                                                                                                 <  2:9257817/150‑1 (MQ=255)
   cgcCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGc                                                                                                                                               >  1:9258265/1‑149 (MQ=255)
   cgcCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCg                                                                                                                                              <  2:9257310/150‑1 (MQ=255)
     ccTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGAt                                                                                                                                            <  1:9257514/150‑1 (MQ=255)
      cTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGAt                                                                                                                                            >  2:9258273/1‑149 (MQ=255)
      cTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATc                                                                                                                                           >  1:9258274/1‑150 (MQ=255)
         aaGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCtt                                                                                                                                         <  1:9257606/149‑1 (MQ=255)
          aGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGc                                                                                                                                               >  2:9258283/1‑142 (MQ=255)
          aGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTc                                                                                                                                       <  1:9257670/150‑1 (MQ=255)
          aGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTc                                                                                                                                       <  1:9257956/150‑1 (MQ=255)
           gTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCt                                                                                                                                      >  1:9258286/1‑150 (MQ=255)
               acggaacggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTgtgg                                                                                                                                  <  1:9258089/150‑1 (MQ=255)
                 ggaacggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTgtggtg                                                                                                                                <  1:9257569/150‑1 (MQ=255)
                   aacggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGcc                                                                                                                              >  2:9258293/1‑150 (MQ=255)
                      ggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTgg                                                                                                                           <  2:9257631/150‑1 (MQ=255)
                       gcgcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggc                                                                                                                          <  2:9257576/150‑1 (MQ=255)
                        cgcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTgtggtg                                                                                                                                >  2:9258301/1‑143 (MQ=255)
                        cgcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggcg                                                                                                                         >  1:9258302/1‑150 (MQ=255)
                        cgcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTgg                                                                                                                           <  1:9257972/148‑1 (MQ=255)
                          cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggcggg                                                                                                                       <  2:9257968/150‑1 (MQ=255)
                          cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTgg                                                                                                                           >  2:9258308/1‑146 (MQ=255)
                            gACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggcgggc                                                                                                                      >  1:9258317/1‑149 (MQ=255)
                             aCCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggcgggcg                                                                                                                     <  1:9257874/149‑1 (MQ=255)
                             aCCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggcgggcg                                                                                                                     <  2:9257834/149‑1 (MQ=255)
                                aTTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTaa                                                                                                                  >  2:9258320/1‑149 (MQ=255)
                                  tGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTgtggtg                                                                                                                                >  2:9258325/1‑133 (MQ=255)
                                   gAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGc                                                                                                              >  1:9258331/1‑150 (MQ=255)
                                      cccGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGGGTAATAGCg                                                                                                             >  2:9258335/1‑148 (MQ=255)
                                        cGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAAt                                                                                                         >  1:9258343/1‑150 (MQ=255)
                                         ggCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATg                                                                                                        <  2:9258197/150‑1 (MQ=255)
                                          gCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGc                                                                                                              <  2:9257880/143‑1 (MQ=255)
                                          gCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGa                                                                                                       <  1:9257900/150‑1 (MQ=255)
                                           cACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATgcc                                                                                                      >  2:9258345/1‑148 (MQ=255)
                                              cGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCtt                                                                                                   <  1:9258010/150‑1 (MQ=255)
                                                ggTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTaa                                                                                                 <  1:9257743/150‑1 (MQ=255)
                                                 gTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAAc                                                                                                >  1:9258356/1‑150 (MQ=255)
                                                  ttAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTggcgggc                                                                                                                      >  2:9258357/1‑127 (MQ=255)
                                                     gagCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAg                                                                                             <  1:9257826/149‑1 (MQ=255)
                                                     gagCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAg                                                                                             <  2:9257850/149‑1 (MQ=255)
                                                     gagCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAg                                                                                             <  2:9257800/149‑1 (MQ=255)
                                                     gagCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGc                                                                                            <  1:9257449/150‑1 (MQ=255)
                                                      agCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCa                                                                                           <  1:9257998/150‑1 (MQ=255)
                                                         aaGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACt                                                                                        >  1:9258367/1‑150 (MQ=255)
                                                           ggCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTgg                                                                                      <  2:9257945/150‑1 (MQ=255)
                                                            gCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGc                                                                                     <  2:9257675/150‑1 (MQ=255)
                                                             cGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGcc                                                                                    >  2:9258368/1‑150 (MQ=255)
                                                                 cAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCAt                                                                                <  2:9258126/150‑1 (MQ=255)
                                                                 cAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCAt                                                                                >  1:9258376/1‑150 (MQ=255)
                                                                  aGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATc                                                                               >  2:9258378/1‑150 (MQ=255)
                                                                    ggCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATcc                                                                              >  1:9258387/1‑149 (MQ=255)
                                                                    ggCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATc                                                                               <  2:9258090/148‑1 (MQ=255)
                                                                        tGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAg                                                                           >  2:9258391/1‑148 (MQ=255)
                                                                        tGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGtt                                                                         <  2:9257743/150‑1 (MQ=255)
                                                                         gCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGttt                                                                        >  1:9258395/1‑150 (MQ=255)
                                                                          cATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGtttt                                                                       <  1:9257799/150‑1 (MQ=255)
                                                                              tCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTa                                                                    <  2:9258003/149‑1 (MQ=255)
                                                                               cccTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAgg                                                                  >  1:9258404/1‑150 (MQ=255)
                                                                                 cTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGt                                                                 >  2:9258407/1‑149 (MQ=255)
                                                                                    tACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTa                                                                    >  2:9258414/1‑143 (MQ=255)
                                                                                      ccTGAAGGGGACTGGCGGAAGCAGACCCTGACGCTGAATATGCCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGAttt                                                            <  2:9257727/149‑1 (MQ=255)
                                                                                      ccTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCTCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGAtt                                                             <  2:9257762/148‑1 (MQ=255)
                                                                                      ccTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGAttt                                                            >  1:9258422/1‑149 (MQ=255)
                                                                                       cTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGAtttt                                                           <  2:9258044/149‑1 (MQ=255)
                                                                                        tGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTc                                                          >  2:9258422/1‑149 (MQ=255)
                                                                                          aaGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCt                                                         <  1:9257658/148‑1 (MQ=255)
                                                                                            ggggACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTAc                                                       >  2:9258432/1‑148 (MQ=255)
                                                                                            ggggACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTAc                                                       >  1:9258433/1‑148 (MQ=255)
                                                                                               gACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACGGGCCGCATCCCAGTTTTTTAGGTGGTTTTCTACCCGc                                                   >  1:7900909/1‑149 (MQ=255)
                                                                                                  tGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTAcc                                                      >  1:9258442/1‑143 (MQ=255)
                                                                                                  tGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTACCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGa                                                                                                       <  1:9257784/94‑1 (MQ=255)
                                                                                                    gCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACg                                             >  2:9258443/1‑150 (MQ=255)
                                                                                                    gCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACg                                             <  1:9258171/150‑1 (MQ=255)
                                                                                                    gCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACg                                             <  1:9258136/150‑1 (MQ=255)
                                                                                                    gCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAAGGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAAc                                              <  1:9258064/149‑1 (MQ=255)
                                                                                                       gAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACggg                                           <  1:9257929/149‑1 (MQ=255)
                                                                                                       gAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACgg                                            >  1:9258451/1‑148 (MQ=255)
                                                                                                          gCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCACCTGGCCGCATCCCAGTTTTTTTGGTGATTTTCtg                                                        >  2:9258455/1‑132 (MQ=255)
                                                                                                             gAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAg                                    <  2:9257893/150‑1 (MQ=255)
                                                                                                             gAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAg                                    >  1:9258464/1‑150 (MQ=255)
                                                                                                             gAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAg                                    <  1:9257845/150‑1 (MQ=255)
                                                                                                              aaCCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTTTGTTTTTTTCTAACAGCCAAACGGGaa                                         >  2:9258464/1‑144 (MQ=255)
                                                                                                              aaCCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAg                                    <  2:9257912/149‑1 (MQ=255)
                                                                                                                 cTGAAGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGa                                 >  2:9258471/1‑149 (MQ=255)
                                                                                                                     aGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAg                            >  2:9258479/1‑150 (MQ=255)
                                                                                                                     aGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAg                            >  1:9258480/1‑150 (MQ=255)
                                                                                                                     aGCTGAATATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAg                            <  1:9257944/150‑1 (MQ=255)
                                                                                                                          aaTATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGACGTTAGCGAGTCAGGttt                        >  2:9258488/1‑149 (MQ=255)
                                                                                                                          aaTATGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGtt                         <  2:9257978/148‑1 (MQ=255)
                                                                                                                           atatGGCCCTGAATTTAAGCGGTGCCGGCGATATTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTc                      <  1:9257707/150‑1 (MQ=255)
                                                                                                                            tatGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGtttt                       >  1:9258494/1‑148 (MQ=255)
                                                                                                                             atGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGttttttttt                                                                  >  2:9258495/1‑101 (MQ=255)
                                                                                                                              tGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAg                    <  2:9258035/149‑1 (MQ=255)
                                                                                                                              tGGCCCTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGCTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCANTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAgg                   <  1:9258031/150‑1 (MQ=255)
                                                                                                                                  ccTGAATTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAGGCGCa               <  1:9257854/150‑1 (MQ=255)
                                                                                                                                      aaTTTAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGa                                                               >  2:9258503/1‑98 (MQ=255)
                                                                                                                                        tttAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTCAGCGAGTCAGGTTTTCAGGCGCACTGGc          >  1:9258508/1‑149 (MQ=255)
                                                                                                                                         ttAAGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTaa                                                                                                                  <  2:9257464/44‑1 (MQ=255)
                                                                                                                                           aaGCGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTAGCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAGGCGCACTGGc          >  2:9258513/1‑146 (MQ=255)
                                                                                                                                              cGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGt                                       <  2:9258158/114‑1 (MQ=255)
                                                                                                                                              cGGTGCCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAGGCGCACTGGCaaa       <  2:9258066/146‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
AAGCGCCTGAAGTTAACGGAACGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATATGGCCCTGAATTTAAGCGGTACCGGCGATCTTTCTGTGGTGCCTGGCGGGCGTAATAGCGAAATGACCTTAACCAGCAACTGGCCGCATCCCAGTTTTTTAGGTGATTTTCTACCAGCCAAACGGGAAGTTAGCGAGTCAGGTTTTCAGGCGCACTGGCAAAGCAGC  >  NC_000913/4638647‑4638939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A