Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F13 I1 R1
|
20 |
580.9 |
19806870 |
98.8% |
19569187 |
140.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,730,953 |
T→C |
noncoding (205/1542 nt) |
rrsG ← |
16S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,730,953 | 0 | T | C | 99.6%
| 1576.3
/ NA
| 468 | noncoding (205/1542 nt) | rrsG | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (218/247); total (218/250) |
| Fisher's exact test for biased strand distribution p-value = 5.01e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 473 total aligned reads displayed.
CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑TCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTT > NC_000913/2730807‑2731099
|
ccTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑cccc > 1:5610004/1‑150 (MQ=17)
tCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑Ccccc > 2:5610005/1‑149 (MQ=17)
ccGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGCCCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑Ccccc < 2:5608855/147‑1 (MQ=17)
cGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACGTCCGATGGCAAGAGGCCCGAAGG‑CCCCCctct > 1:5610010/1‑150 (MQ=17)
gTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCtt < 2:5609214/150‑1 (MQ=17)
tAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCttt < 1:5609584/150‑1 (MQ=17)
tAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCttc > 1:5610016/1‑149 (MQ=17)
ggAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTg < 2:5609519/149‑1 (MQ=17)
gAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGt < 1:5609397/150‑1 (MQ=17)
tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGc > 2:5610024/1‑150 (MQ=17)
gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCctc > 2:5610030/1‑137 (MQ=17)
gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGa < 2:5609586/150‑1 (MQ=17)
cGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTg > 1:5610035/1‑144 (MQ=17)
gtgtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACAtt < 2:5609647/150‑1 (MQ=25)
tgtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGTCCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTa < 1:5609536/150‑1 (MQ=25)
tctcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTAt < 1:5609281/149‑1 (MQ=25)
aGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGGCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGc < 2:5609535/147‑1 (MQ=255)
aGTTCCAGTGGGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGTGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCg > 2:5610042/1‑148 (MQ=255)
ttCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTAt > 1:5610046/1‑150 (MQ=25)
cAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAg > 1:5610050/1‑150 (MQ=25)
gtgtGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCt < 2:5609706/150‑1 (MQ=25)
tgtgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAg > 2:5610053/1‑147 (MQ=25)
tgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTAcc < 1:5609607/150‑1 (MQ=25)
tGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGttt > 1:5610061/1‑150 (MQ=21)
cATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCa > 2:5610064/1‑149 (MQ=25)
acccTCTCAGCCCAGCTAGGCTTCTGCGCCTTGGTGAGCCGTGACCCCACCAACAAGCTAATCCCATCTGGGCACAGCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTATGGTCTTGCGa < 2:5609343/118‑1 (MQ=11)
aTCCTCTCCGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCagt < 2:5609662/150‑1 (MQ=255)
ccTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCagtag > 1:5610072/1‑150 (MQ=25)
ctctCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGCTGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTCTGCGGTATTAGATACCGTTTCCagtag > 2:5610072/1‑149 (MQ=255)
ctctCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCagta < 2:5609449/148‑1 (MQ=25)
ctcAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTa > 2:5610077/1‑150 (MQ=25)
aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGCCCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATc > 1:5610085/1‑150 (MQ=255)
aGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTAt < 1:5609739/148‑1 (MQ=25)
ccAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATccccc < 1:5609674/150‑1 (MQ=25)
cAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCt < 1:5609707/150‑1 (MQ=25)
cTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCa > 2:5610088/1‑150 (MQ=25)
aGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCAt > 1:5610095/1‑149 (MQ=25)
gggATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCAt > 2:5610096/1‑148 (MQ=25)
gggATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCAt < 1:5609646/148‑1 (MQ=25)
gggATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATc < 1:5609721/149‑1 (MQ=25)
gggATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCa < 1:5609257/150‑1 (MQ=25)
gggATCGTCGCCTTGGTGAGCCGCTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCAt < 1:5609464/148‑1 (MQ=255)
tcgtcgCCTTGGTAAGCCGTTACCCCACCAACAAGCTAATCCCATCTGAGCTCATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTCTTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAgg > 2:5610102/1‑148 (MQ=11)
cgtcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCa < 1:5609375/149‑1 (MQ=25)
gtcgCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGc > 1:5610106/1‑150 (MQ=37)
gCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTc < 1:5608529/150‑1 (MQ=255)
cTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCTATCTGGGCACATCCGANGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACGTTATACGGTATTAGCCACCGATTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTccc < 2:5609614/150‑1 (MQ=11)
cTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTccc < 1:5609621/150‑1 (MQ=255)
cTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTcc > 2:5610112/1‑149 (MQ=255)
tGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTcc > 1:5610119/1‑147 (MQ=255)
ggTGAGCCGTTACCCCACCTACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGCCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCa < 2:5609406/148‑1 (MQ=255)
ggTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAg < 1:5609794/149‑1 (MQ=255)
gagAGCCGTTACCCCACCAAAAAGCTAATCCCATCAGCGCACATCCGATGGCAAGAGGCCCGAAGG‑CCACCCTCTTTGGTCTTGCGACATTATg > 2:5610123/3‑94 (MQ=14)
aGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCNCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCTGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACAt > 1:5610128/1‑149 (MQ=255)
gTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACt > 2:5610133/1‑149 (MQ=255)
aCCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCAcc > 1:5610138/1‑150 (MQ=255)
ccaccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGt < 1:5609774/150‑1 (MQ=38)
ccaACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCg > 2:5610142/1‑150 (MQ=255)
caacacGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGc < 1:5609513/150‑1 (MQ=255)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCGGCTTCCCAGACATTACTCACCCGTCCGCCACt > 2:5610148/1‑150 (MQ=255)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGAc < 2:5609794/129‑1 (MQ=25)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACt > 1:5610151/1‑150 (MQ=37)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACt < 1:5609847/150‑1 (MQ=37)
gCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCg < 1:5609448/150‑1 (MQ=25)
aTCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCa < 1:5609574/149‑1 (MQ=25)
aTCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAg > 1:5610159/1‑150 (MQ=25)
tCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTc > 2:5610161/1‑136 (MQ=21)
cccATCTGGGCACATCCGATGGCAATAGGCCCGAAGG‑CCCCCCTCTTTGGTCTAGCGACATTATGCGGTAtt < 2:5609503/72‑1 (MQ=11)
cccATCTGGGCACATCCGATGGCAAGAGGCCCGAATG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCa < 1:5609549/147‑1 (MQ=25)
cccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGc > 1:5610165/1‑149 (MQ=25)
ccATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGa < 2:5609674/150‑1 (MQ=38)
cATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCGCCTCTTTGGTCTTGCGACATTATGNGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGaa < 1:5609919/150‑1 (MQ=255)
cATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCg > 1:5610172/1‑148 (MQ=37)
ctCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCGCTCCATCAGGCAGCtt < 2:5609375/110‑1 (MQ=255)
aTCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCa > 2:5610175/1‑137 (MQ=25)
ggtcacaTCCGATGGCAAGAGCCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGtt < 2:5609079/82‑1 (MQ=11)
ggCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAagcagc > 1:5610182/1‑149 (MQ=255)
ggCACACCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTa < 2:5609549/117‑1 (MQ=255)
gCACATCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAagc < 2:5609478/145‑1 (MQ=38)
cacaTCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTCTCCCCCTCCATCAGGCAGCTTCCCAGACATTACt < 2:5609597/117‑1 (MQ=255)
acaTCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCg < 1:5609423/133‑1 (MQ=37)
acaTCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgc < 1:5609655/150‑1 (MQ=255)
acaTCCGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgc > 2:5610186/1‑150 (MQ=255)
ccGATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATCATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCATGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAg > 2:5610191/1‑133 (MQ=255)
gATGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAg > 1:5610197/1‑143 (MQ=37)
aTGGCAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTcc > 2:5610197/1‑150 (MQ=255)
gCAAGACGCCCGAAGG‑CCCCTCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCa < 2:5609735/126‑1 (MQ=255)
cAAGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGCATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGt > 1:5610206/1‑149 (MQ=255)
aaGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTa > 2:5610205/1‑150 (MQ=255)
aaGAGGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTa < 1:5609591/150‑1 (MQ=255)
agGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCNCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCg > 2:5610212/1‑150 (MQ=255)
agGCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTAGCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgct < 2:5609434/136‑1 (MQ=255)
tgCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCa < 2:5609298/119‑1 (MQ=255)
gCCCGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGtt > 2:5610218/1‑150 (MQ=255)
cccGGAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTc < 2:5609883/150‑1 (MQ=255)
ccGAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCg < 1:5609500/150‑1 (MQ=255)
gAAGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAc > 1:5610222/1‑150 (MQ=255)
aaGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACt < 1:5609688/150‑1 (MQ=255)
aaGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACt < 1:5609185/150‑1 (MQ=255)
aGG‑CCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt > 1:5610231/1‑150 (MQ=255)
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CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGG‑TCCCCCTCTTTGGTCTTGCGACATTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTT > NC_000913/2730807‑2731099
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
