Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F13 I1 R1	112	360.8	17302090	99.7%	17250183	98.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,544,986	(C)_5→6	coding (624/858 nt)	murR ←	DNA‑binding transcriptional dual regulator MurR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,544,981	1	.	C	99.4%	1292.7 / ‑0.8	308	coding (629/858 nt)	murR	DNA‑binding transcriptional dual regulator MurR
Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (141/165); total (142/166)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 341 total aligned reads displayed.

CGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑CCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCAACGCCT  >  NC_000913/2544881‑2545077

cgaGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTg                                                                                                   <  1:4733636/101‑1 (MQ=255)

 gaGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑c                                                                                                 >  1:4734042/1‑101 (MQ=255)

   gCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑ccc                                                                                               >  2:4734045/1‑101 (MQ=255)

    cTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑cccc                                                                                              <  2:4733389/101‑1 (MQ=255)

    cTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑cccc                                                                                              >  1:4734047/1‑101 (MQ=255)

     tACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑ccccc                                                                                             >  1:4734052/1‑101 (MQ=255)

     tACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑ccccc                                                                                             >  2:4734054/1‑101 (MQ=255)

        gCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑cccccctg                                                                                          <  1:4733557/101‑4 (MQ=255)

           aTTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCtt                                                                                        >  2:4734061/1‑101 (MQ=255)

           aTTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCtt                                                                                        >  1:4734060/1‑101 (MQ=255)

             tCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTc                                                                                      <  2:4733515/101‑1 (MQ=255)

                gTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTg                                                                                   >  2:4734068/1‑101 (MQ=255)

                  ttCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGcc                                                                                 >  1:4734069/1‑101 (MQ=255)

                   tctcCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCg                                                                                >  2:4734072/1‑101 (MQ=255)

                   tctcCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCg                                                                                <  1:4733525/101‑1 (MQ=255)

                    ctcCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGc                                                                               >  1:4734076/1‑101 (MQ=255)

                      ccGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCtt                                                                             <  2:4733661/101‑1 (MQ=255)

                        ggAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCt                                                                           >  2:4734083/1‑101 (MQ=255)

                        ggAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCt                                                                           >  1:4734082/1‑101 (MQ=255)

                        ggAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCt                                                                           <  2:4733657/101‑1 (MQ=255)

                        ggAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCt                                                                           <  2:4733719/101‑1 (MQ=255)

                         gAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTg                                                                          <  1:4733574/101‑1 (MQ=255)

                         gAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTg                                                                          <  1:4733612/101‑1 (MQ=255)

                           aaCGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTgcg                                                                        >  2:4734086/1‑101 (MQ=255)

                             cGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGca                                                                      <  2:4733466/101‑1 (MQ=255)

                             cGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGca                                                                      >  1:4734089/1‑101 (MQ=255)

                               gTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGcaca                                                                    >  2:4734092/1‑101 (MQ=255)

                               gTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGcaca                                                                    <  2:4733555/101‑1 (MQ=255)

                                 aTCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGcaca                                                                    <  2:4733538/99‑1 (MQ=255)

                                 aTCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAg                                                                  >  1:4734096/1‑101 (MQ=255)

                                  tCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGa                                                                 <  2:4733602/101‑1 (MQ=255)

                                   cGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGAc                                                                >  1:4734100/1‑101 (MQ=255)

                                    gAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACa                                                               <  2:4733593/101‑1 (MQ=255)

                                     aGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACaa                                                              >  1:4734105/1‑101 (MQ=255)

                                     aGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACaa                                                              >  2:4734106/1‑101 (MQ=255)

                                       ggTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAAtc                                                            <  1:4733672/101‑1 (MQ=255)

                                        gTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAAtct                                                           <  2:4733452/101‑1 (MQ=255)

                                        gTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAAtct                                                           <  2:4733495/101‑1 (MQ=255)

                                          gAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATctct                                                         <  2:4733547/101‑1 (MQ=255)

                                           aaaTGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCtt                                                        >  2:4734112/1‑101 (MQ=255)

                                            aaTGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCttt                                                       <  2:4733369/101‑1 (MQ=255)

                                              tGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCttttt                                                     <  2:4733578/101‑1 (MQ=255)

                                               gcgcCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCtttttt                                                    <  2:4733867/101‑1 (MQ=255)

                                                cgcCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGca                                                                      <  2:4733393/82‑1 (MQ=255)

                                                 gcCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTAc                                                  >  1:4734116/1‑101 (MQ=255)

                                                 gcCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTAc                                                  <  1:4733871/101‑1 (MQ=255)

                                                    aGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGc                                               >  2:4734121/1‑101 (MQ=255)

                                                    aGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGc                                               >  1:4734122/1‑101 (MQ=255)

                                                    aGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGc                                               <  2:4733741/101‑1 (MQ=255)

                                                      ccgccgCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCtttt                                                      <  2:4733760/92‑1 (MQ=255)

                                                       cgccgcAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGc                                            >  1:4734127/1‑101 (MQ=255)

                                                        gccgcAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCt                                           >  2:4734128/1‑101 (MQ=255)

                                                        gccgcAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCt                                           <  2:4733526/101‑1 (MQ=255)

                                                        gccgcAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCt                                           <  1:4733552/101‑1 (MQ=255)

                                                          cgcAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGt                                         >  1:4734133/1‑101 (MQ=255)

                                                          cgcAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGt                                         >  2:4734134/1‑101 (MQ=255)

                                                             aGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAag                                      >  1:4734139/1‑101 (MQ=255)

                                                             aGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAag                                      <  2:4733752/101‑1 (MQ=255)

                                                              gCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAaga                                     >  2:4734142/1‑101 (MQ=255)

                                                               cGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAagag                                    <  2:4733300/101‑1 (MQ=255)

                                                               cGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAagag                                    <  1:4733728/101‑1 (MQ=255)

                                                               cGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAagag                                    >  2:4734145/1‑101 (MQ=255)

                                                               cGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAagag                                    <  1:4733408/101‑1 (MQ=255)

                                                                ggAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAgaga                                   >  1:4734148/1‑101 (MQ=255)

                                                                 gagaGTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGAt                                  >  1:4734152/1‑101 (MQ=255)

                                                                  agagTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATa                                 <  2:4733919/101‑1 (MQ=255)

                                                                  agagTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATa                                 <  2:4733713/101‑1 (MQ=255)

                                                                   gagTCAGTCAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAg                                <  1:4733601/101‑1 (MQ=255)

                                                                    agtcagtcAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGc                               >  2:4734156/1‑101 (MQ=255)

                                                                    agtcagtcAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGc                               <  1:4733456/101‑1 (MQ=255)

                                                                    agtcagtcAGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGc                               >  2:4734159/1‑101 (MQ=255)

                                                                     gtcagtcaGAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCg                              <  1:4733627/101‑1 (MQ=255)

                                                                      tcagtcagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGa                             <  1:4733291/101‑1 (MQ=255)

                                                                      tcagtcagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGa                             <  2:4733673/101‑1 (MQ=255)

                                                                         gtcagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGAttt                          <  1:4733766/101‑1 (MQ=255)

                                                                          tcagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTg                         >  2:4734166/1‑101 (MQ=255)

                                                                          tcagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTg                         >  1:4734164/1‑101 (MQ=255)

                                                                           cagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGt                        <  1:4733651/101‑1 (MQ=255)

                                                                           cagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGt                        >  1:4734169/1‑101 (MQ=255)

                                                                           cagAGAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGt                        <  2:4733617/101‑1 (MQ=255)

                                                                            agagAAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTa                       >  2:4734174/1‑101 (MQ=255)

                                                                              agaAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACa                     >  1:4734175/1‑101 (MQ=255)

                                                                               gaAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACAt                    <  2:4733800/101‑1 (MQ=255)

                                                                               gaAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACAt                    <  2:4733330/101‑1 (MQ=255)

                                                                               gaAGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACAt                    <  2:4733637/101‑1 (MQ=255)

                                                                                aaGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATc                   >  2:4734178/1‑101 (MQ=255)

                                                                                aaGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATc                   <  2:4733644/101‑1 (MQ=255)

                                                                                aaGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATc                   <  2:4733821/101‑1 (MQ=255)

                                                                                 aGTAATGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCg                  <  2:4733565/101‑1 (MQ=255)

                                                                                    aaTGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCt               >  1:4734185/1‑101 (MQ=255)

                                                                                      tGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCttt             <  1:4733805/101‑1 (MQ=255)

                                                                                      tGGCAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCttt             >  2:4734186/1‑101 (MQ=255)

                                                                                         cAATCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCtttttt          <  2:4733704/101‑1 (MQ=255)

                                                                                          aaTCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTc         >  1:4734189/1‑101 (MQ=255)

                                                                                          aaTCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTc         <  2:4733765/101‑1 (MQ=255)

                                                                                            tCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCaa       >  2:4734194/1‑101 (MQ=255)

                                                                                            tCACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCaa       <  1:4733706/101‑1 (MQ=255)

                                                                                             cACCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCAAc      <  1:4733395/101‑1 (MQ=255)

                                                                                              aCCGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCAACg     >  1:4734198/1‑101 (MQ=255)

                                                                                               ccGTTGCCCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCAACGc    >  1:4734202/1‑101 (MQ=255)

CGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCGCAGCGGAGAGTCAGTCAGAGAAGTAATGGCAATCACCGTTG‑CCCCCTGCTTTCGTGCCGCTTCTGCGCACAAGACAATCTCTTTTTTACTGCCGCTGTAAGAGATAGCGATTTGTACATCGCCTTTTTTCAACGCCT  >  NC_000913/2544881‑2545077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A