Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F13 I1 R1 112 360.8 17302090 99.7% 17250183 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,758,369 G→A Q78* (CAA→TAA)  yfjH ← CP4‑57 prophage; protein YfjH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,758,3690GA99.7% 1510.0 / NA 371Q78* (CAA→TAA) yfjHCP4‑57 prophage; protein YfjH
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (187/183);  minor base C (0/1);  total (187/184)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 371 total aligned reads displayed.

CTCCAGTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTGCTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCG  >  NC_000913/2758271‑2758466
                                                                                                  |                                                                                                 
ctcCAGTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTAct                                                                                                 >  2:5112272/1‑101 (MQ=255)
   cAGTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACtctc                                                                                              >  1:5112279/1‑101 (MQ=255)
    aGTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCg                                                                                             <  2:5111764/101‑1 (MQ=255)
    aGTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCg                                                                                             >  2:5112280/1‑101 (MQ=255)
     gTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGc                                                                                            <  2:5111561/101‑1 (MQ=255)
      ttGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCa                                                                                           <  2:5111464/101‑1 (MQ=255)
      ttGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCa                                                                                           >  2:5112285/1‑101 (MQ=255)
      ttGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCa                                                                                           <  2:5111683/101‑1 (MQ=255)
        gCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCAtt                                                                                         <  2:5111309/101‑1 (MQ=255)
        gCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCAtt                                                                                         <  1:5111946/101‑1 (MQ=255)
          ccATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCt                                                                                       >  2:5112292/1‑101 (MQ=255)
          ccATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCt                                                                                       >  1:5112291/1‑101 (MQ=255)
           cATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTg                                                                                      >  1:5112297/1‑101 (MQ=255)
            aTTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGc                                                                                     >  2:5112300/1‑101 (MQ=255)
            aTTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGc                                                                                     <  1:5111643/101‑1 (MQ=255)
              tCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCt                                                                                   >  1:5112303/1‑101 (MQ=255)
               cACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTa                                                                                  <  2:5111712/101‑1 (MQ=255)
               cACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTa                                                                                  <  2:5111788/101‑1 (MQ=255)
                aCTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAg                                                                                 >  1:5112307/1‑101 (MQ=255)
                  tGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCt                                                                               >  1:5112312/1‑101 (MQ=255)
                   gTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTc                                                                              <  2:5111934/101‑1 (MQ=255)
                   gTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTc                                                                              >  2:5112314/1‑101 (MQ=255)
                    tATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCa                                                                             <  2:5111658/101‑1 (MQ=255)
                       ggTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATc                                                                          <  1:5111801/101‑1 (MQ=255)
                       ggTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATc                                                                          <  1:5111765/101‑1 (MQ=255)
                        gTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATcc                                                                         <  1:5111887/101‑1 (MQ=255)
                          gCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGt                                                                       <  1:5111352/101‑1 (MQ=255)
                          gCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGt                                                                       >  1:5112319/1‑101 (MQ=255)
                          gCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGt                                                                       <  1:5111959/101‑1 (MQ=255)
                           ccTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTa                                                                      <  2:5111886/101‑1 (MQ=255)
                           ccTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTa                                                                      <  2:5111744/101‑1 (MQ=255)
                           ccTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTa                                                                      >  2:5112321/1‑101 (MQ=255)
                             ttGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTAtt                                                                    >  1:5112325/1‑101 (MQ=255)
                              tGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTAttt                                                                   <  1:5111706/101‑1 (MQ=255)
                              tGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTAttt                                                                   >  2:5112330/1‑101 (MQ=255)
                                tttCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTcc                                                                 <  2:5111917/101‑1 (MQ=255)
                                tttCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTcc                                                                 >  1:5112333/1‑101 (MQ=255)
                                 ttCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCg                                                                <  1:5111747/101‑1 (MQ=255)
                                 ttCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCg                                                                <  2:5111372/101‑1 (MQ=255)
                                    ccATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgat                                                             <  1:5111465/101‑1 (MQ=255)
                                    ccATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgat                                                             <  1:5111558/101‑1 (MQ=255)
                                    ccATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgat                                                             >  1:5112338/1‑101 (MQ=255)
                                     cATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgatg                                                            >  2:5112339/1‑101 (MQ=255)
                                     cATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgatg                                                            <  2:5111602/101‑1 (MQ=255)
                                       tGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgatgat                                                          <  1:5112056/101‑1 (MQ=255)
                                       tGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgatgat                                                          >  1:5112345/1‑101 (MQ=255)
                                       tGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgatgat                                                          <  2:5111799/101‑1 (MQ=255)
                                       tGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGgatgat                                                          <  1:5112239/101‑1 (MQ=255)
                                         gTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCt                                                        <  1:5111681/101‑1 (MQ=255)
                                          tACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCtt                                                       >  2:5112347/1‑101 (MQ=255)
                                          tACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCtt                                                       <  1:5111853/101‑1 (MQ=255)
                                            cATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTcc                                                     <  1:5112028/101‑1 (MQ=255)
                                             aTCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCct                                                    >  2:5112357/1‑101 (MQ=255)
                                             aTCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCct                                                    >  2:5112353/1‑101 (MQ=255)
                                               cGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCctct                                                  >  2:5112361/1‑101 (MQ=255)
                                               cGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCctct                                                  >  1:5112362/1‑101 (MQ=255)
                                                  aGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGa                                               >  1:5112367/1‑101 (MQ=255)
                                                  aGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGa                                               <  2:5111842/101‑1 (MQ=255)
                                                  aGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGa                                               >  2:5112369/1‑101 (MQ=255)
                                                  aGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGa                                               <  1:5111608/101‑1 (MQ=255)
                                                    gAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAAc                                             >  2:5112373/1‑101 (MQ=255)
                                                      atatAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACAt                                           <  2:5112130/101‑1 (MQ=255)
                                                      atatAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACAt                                           <  2:5111503/101‑1 (MQ=255)
                                                       tataACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATc                                          >  1:5112377/1‑101 (MQ=255)
                                                        ataACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCa                                         >  1:5112383/1‑101 (MQ=255)
                                                        ataACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCa                                         <  2:5111872/101‑1 (MQ=255)
                                                         taACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAg                                        >  1:5112387/1‑101 (MQ=255)
                                                         taACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAg                                        >  2:5112385/1‑101 (MQ=255)
                                                          aaCCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGt                                       <  1:5112123/101‑1 (MQ=255)
                                                           aCCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTa                                      >  2:5112392/1‑101 (MQ=255)
                                                            ccTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTAt                                     <  2:5112005/101‑1 (MQ=255)
                                                             cTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATc                                    >  1:5112399/1‑101 (MQ=255)
                                                             cTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATc                                    >  2:5112398/1‑101 (MQ=255)
                                                              tCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATcc                                   <  2:5111735/101‑1 (MQ=255)
                                                               cacaCGAGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCa                                  >  2:5112403/1‑101 (MQ=255)
                                                                     aGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGTTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGccc                            <  2:5111630/101‑1 (MQ=255)
                                                                     aGTACCTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGccc                            >  1:5112407/1‑101 (MQ=255)
                                                                         ccTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattc                        <  2:5112078/101‑1 (MQ=255)
                                                                         ccTATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattc                        >  2:5112411/1‑101 (MQ=255)
                                                                           tATTTTCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattcgc                      >  1:5112414/1‑101 (MQ=255)
                                                                               ttCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGt                                       >  2:5112421/1‑80 (MQ=255)
                                                                               ttCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattcgcattc                  <  1:5111770/101‑1 (MQ=255)
                                                                               ttCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattcgcattc                  <  1:5111664/101‑1 (MQ=255)
                                                                               ttCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattcgcattc                  <  2:5111830/101‑1 (MQ=255)
                                                                               ttCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattcgcattc                  >  1:5112420/1‑101 (MQ=255)
                                                                               ttCTCAGAGCTCCAGAATTACTCTCGCATTCTGCCGAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcattcgcattc                  <  1:5111915/101‑1 (MQ=255)
                                                                                 ctcAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCgg                <  2:5111483/101‑1 (MQ=255)
                                                                                   cAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCcat                          <  2:5111985/89‑1 (MQ=255)
                                                                                   cAGAGCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGAc              >  2:5112427/1‑101 (MQ=255)
                                                                                   cAGAGCTCCAGAAGTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGAc              >  1:5112428/1‑101 (MQ=255)
                                                                                     gagCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACAt            >  1:5112433/1‑101 (MQ=255)
                                                                                       gCTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGATCATCAGTATCCACCGCCCATTCGCATTCGGACAtgt          >  1:5112437/1‑101 (MQ=255)
                                                                                        cTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACAtgtg         <  1:5111595/101‑1 (MQ=255)
                                                                                        cTCCAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACAtgtg         >  2:5112441/1‑101 (MQ=255)
                                                                                          ccAGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGAt       >  1:5112445/1‑101 (MQ=255)
                                                                                            aGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAg     >  2:5112448/1‑101 (MQ=255)
                                                                                            aGAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAg     <  1:5111839/101‑1 (MQ=255)
                                                                                             gAATTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAgg    >  1:5112453/1‑101 (MQ=255)
                                                                                              aaTTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGc   >  1:5112458/1‑101 (MQ=255)
                                                                                              aaTTACTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGc   <  2:5111859/101‑1 (MQ=255)
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CTCCAGTTGCCCATTCACTGTATGGTGCCTTGTTTCCCATGGTACATCGCAGGAATATAACCTCACACGAGTACCTATTTTCTCAGAGCTCCAGAATTGCTCTCGCATTCTGCCTAGCTCAATCCGTATTTCCGGATGATCTTCCTCTAGAACATCAGTATCCACCGCCCATTCGCATTCGGACATGTGATAGGCG  >  NC_000913/2758271‑2758466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A