Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F13 I1 R1 112 360.8 17302090 99.7% 17250183 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,970,379 G→A intergenic (+28/‑41) mutH → / → ygdQ DNA mismatch repair protein MutH/UPF0053 inner membrane protein YgdQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,970,3790GA100.0% 1584.5 / NA 373intergenic (+28/‑41)mutH/ygdQDNA mismatch repair protein MutH/UPF0053 inner membrane protein YgdQ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (166/207);  total (166/207)

Only 100 of 373 total aligned reads displayed.

TGCCACGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGGCATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTACGCTGACG  >  NC_000913/2970281‑2970476
                                                                                                  |                                                                                                 
tGCCACGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACa                                                                                                 >  1:5507529/1‑101 (MQ=255)
tGCCACGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACa                                                                                                 <  2:5506996/101‑1 (MQ=255)
 gCCACGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACat                                                                                                <  1:5507036/101‑1 (MQ=255)
  ccACGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACata                                                                                               >  2:5507533/1‑101 (MQ=255)
    aCGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACAtata                                                                                             <  2:5507087/101‑1 (MQ=255)
     cgcgGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATaa                                                                                            >  1:5507536/1‑101 (MQ=255)
      gcgGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAAt                                                                                           <  1:5506855/101‑1 (MQ=255)
      gcgGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAAt                                                                                           <  1:5506889/101‑1 (MQ=255)
        ggCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTa                                                                                         <  1:5506645/101‑1 (MQ=255)
        ggCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTa                                                                                         >  1:5507546/1‑101 (MQ=255)
        ggCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTa                                                                                         >  1:5507542/1‑101 (MQ=255)
        ggCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTa                                                                                         >  2:5507543/1‑101 (MQ=255)
           ttttATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCg                                                                                      <  1:5506940/101‑1 (MQ=255)
           ttttATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCg                                                                                      <  2:5506958/101‑1 (MQ=255)
            tttATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACatat                                                                                              <  2:5507315/92‑1 (MQ=255)
            tttATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGc                                                                                     >  2:5507555/1‑101 (MQ=255)
             ttATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCt                                                                                    >  1:5507560/1‑101 (MQ=255)
              tATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCtt                                                                                   >  2:5507561/1‑101 (MQ=255)
              tATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCtt                                                                                   <  1:5506783/101‑1 (MQ=255)
                tttGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCa                                                                                 >  2:5507568/1‑101 (MQ=255)
                  tGAAGAAGAATTTCCCCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAtt                                                                               <  2:5506854/101‑1 (MQ=255)
                   gaagaagaaTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAttt                                                                              >  1:5507572/1‑101 (MQ=255)
                     agaagaaTTTCACCAGTGCACTACTGGCCCGTTATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAttttt                                                                            >  2:5507578/1‑101 (MQ=255)
                     agaagaaTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAttttt                                                                            >  1:5507579/1‑101 (MQ=255)
                       aagaaTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAttttttt                                                                          <  2:5507019/101‑1 (MQ=255)
                       aagaaTTTCACCAGTGCACTACCGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAttttttt                                                                          <  1:5506925/101‑1 (MQ=255)
                        agaaTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTg                                                                         <  1:5507176/101‑1 (MQ=255)
                         gaaTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTgg                                                                        <  1:5507120/101‑1 (MQ=255)
                         gaaTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTgg                                                                        >  2:5507585/1‑101 (MQ=255)
                           aTTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCa                                                                      >  1:5507587/1‑101 (MQ=255)
                            tttCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAg                                                                     <  1:5507029/101‑1 (MQ=255)
                               cACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAg                                                                     >  2:5507595/1‑98 (MQ=255)
                               cACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGc                                                                  >  1:5507593/1‑101 (MQ=255)
                                 ccAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAgg                                                                    <  2:5506907/97‑1 (MQ=255)
                                  cAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCttt                                                               >  1:5507599/1‑101 (MQ=255)
                                   aGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGc                                                                       >  1:5507602/1‑92 (MQ=255)
                                     tGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTa                                                            <  1:5506831/101‑1 (MQ=255)
                                     tGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTa                                                            <  1:5507009/101‑1 (MQ=255)
                                      gCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAg                                                           <  1:5507266/101‑1 (MQ=255)
                                      gCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAg                                                           >  2:5507605/1‑101 (MQ=255)
                                        actactGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGAt                                                         <  1:5507094/101‑1 (MQ=255)
                                        actactGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGAt                                                         >  1:5507609/1‑101 (MQ=255)
                                          tactGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGt                                                       <  1:5506981/101‑1 (MQ=255)
                                           actGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCttt                                                               >  1:5507615/1‑92 (MQ=255)
                                            ctGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTa                                                     >  2:5507616/1‑101 (MQ=255)
                                                cccGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTg                                                 <  1:5507216/101‑1 (MQ=255)
                                                  cGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAg                                                                     <  1:5507134/79‑1 (MQ=255)
                                                  cGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCa                                               >  2:5507621/1‑101 (MQ=255)
                                                   gTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAg                                                           >  1:5507625/1‑88 (MQ=255)
                                                   gTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCAt                                              <  2:5507119/101‑1 (MQ=255)
                                                      aTTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGa                                           >  2:5507627/1‑101 (MQ=255)
                                                      aTTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGa                                           <  2:5506987/101‑1 (MQ=255)
                                                       ttttCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGAt                                          <  2:5507026/101‑1 (MQ=255)
                                                        tttCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATa                                         <  2:5507129/101‑1 (MQ=255)
                                                         ttCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATaa                                        <  2:5506870/101‑1 (MQ=255)
                                                         ttCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGATTCATTTTTTTGGCAGGGCTTTTTa                                                            <  1:5506709/81‑1 (MQ=255)
                                                          tCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAAc                                       >  1:5507633/1‑101 (MQ=255)
                                                          tCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAAc                                       <  2:5507163/101‑1 (MQ=255)
                                                           cTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAAcc                                      <  1:5507103/101‑1 (MQ=255)
                                                             gATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGa                                    >  2:5507636/1‑101 (MQ=255)
                                                               tCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATc                                  >  1:5507640/1‑101 (MQ=255)
                                                                 cAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCt                                <  2:5506790/101‑1 (MQ=255)
                                                                 cAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCt                                >  2:5507642/1‑101 (MQ=255)
                                                                 cAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCt                                <  1:5507192/101‑1 (MQ=255)
                                                                  aGTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTa                               <  1:5506969/101‑1 (MQ=255)
                                                                   gTAGCCATCGCTTTGGCCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTa                               <  1:5507152/100‑1 (MQ=255)
                                                                   gTAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTaa                              <  1:5506953/101‑1 (MQ=255)
                                                                    tAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAAc                             <  2:5506896/101‑1 (MQ=255)
                                                                    tAGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAAc                             <  2:5507006/101‑1 (MQ=255)
                                                                     aGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACg                            <  1:5506905/101‑1 (MQ=255)
                                                                     aGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACg                            <  1:5507086/101‑1 (MQ=255)
                                                                     aGCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACg                            <  2:5507384/101‑1 (MQ=255)
                                                                      gCCATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGc                           <  1:5507363/101‑1 (MQ=255)
                                                                       ccATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGcc                          >  1:5507650/1‑101 (MQ=255)
                                                                       ccATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGcc                          >  2:5507649/1‑101 (MQ=255)
                                                                        cATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCAttt                                                                              <  2:5506982/48‑1 (MQ=255)
                                                                        cATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCt                         <  1:5507074/101‑1 (MQ=255)
                                                                        cATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCt                         <  1:5507055/101‑1 (MQ=255)
                                                                        cATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCt                         >  2:5507654/1‑101 (MQ=255)
                                                                        cATCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCt                         <  2:5507078/101‑1 (MQ=255)
                                                                         aTCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTg                        >  1:5507657/1‑101 (MQ=255)
                                                                          tCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTaa                              <  1:5507331/94‑1 (MQ=255)
                                                                          tCGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTgg                       <  1:5506977/101‑1 (MQ=255)
                                                                           cGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCa                                               <  2:5507265/76‑1 (MQ=255)
                                                                           cGCTTTGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGc                      >  1:5507660/1‑101 (MQ=255)
                                                                              tttGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTg                   >  2:5507670/1‑101 (MQ=255)
                                                                              tttGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTg                   >  1:5507667/1‑101 (MQ=255)
                                                                               ttGACCTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTgc                  <  2:5507066/101‑1 (MQ=255)
                                                                                 gcccTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCtttt                                                              <  2:5507180/53‑1 (MQ=255)
                                                                                   ccTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTc              <  2:5507236/101‑1 (MQ=255)
                                                                                   ccTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTc              >  1:5507674/1‑101 (MQ=255)
                                                                                    cTGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCg             >  2:5507676/1‑101 (MQ=255)
                                                                                     tGCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCgg            >  2:5507680/1‑101 (MQ=255)
                                                                                      gCCGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGt           <  1:5507162/101‑1 (MQ=255)
                                                                                        cGCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTac         >  2:5507684/1‑101 (MQ=255)
                                                                                         gCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTacg        >  1:5507690/1‑101 (MQ=255)
                                                                                         gCTTTCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTacg        >  2:5507689/1‑101 (MQ=255)
                                                                                           tttCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTacgct      <  2:5507050/101‑1 (MQ=255)
                                                                                             tCCGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTacgctga    >  2:5507697/1‑101 (MQ=255)
                                                                                               cGGACATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTacgctgacg  >  1:5507699/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
TGCCACGCGGCTTTTATTTGAAGAAGAATTTCACCAGTGCACTACTGGCCCGTCATTTTCTGATCCAGTAGCCATCGCTTTGACCTGCCGCTTTCCGGGCATATAATTACCGCTTCATTTTTTTGGCAGGGCTTTTTAGATGTTATTTGCATGGATAACCGATCCTAACGCCTGGCTTGCGCTCGGTACGCTGACG  >  NC_000913/2970281‑2970476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A