Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I1 R1 131 334.0 15923330 99.7% 15875560 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,299,097 T→C N161S (AAC→AGC)  napH ← ferredoxin‑type protein NapH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,299,0970TC99.7% 1212.2 / NA 298N161S (AAC→AGC) napHferredoxin‑type protein NapH
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (150/147);  minor base A (1/0);  total (151/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 298 total aligned reads displayed.

GTTCAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGTTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGACTG  >  NC_000913/2298999‑2299194
                                                                                                  |                                                                                                 
gtTCAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTg                                                                                                 >  2:3855945/1‑101 (MQ=255)
 ttCAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGa                                                                                                >  1:3855949/1‑101 (MQ=255)
  tCAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGAt                                                                                               >  2:3855952/1‑101 (MQ=255)
   cAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAATCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATc                                                                                              <  2:3855375/101‑1 (MQ=255)
   cAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATc                                                                                              <  2:3855519/101‑1 (MQ=255)
     aCGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCa                                                                                            >  1:3855958/1‑101 (MQ=255)
      cGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCAt                                                                                           <  2:3855564/101‑1 (MQ=255)
      cGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCAt                                                                                           >  2:3855961/1‑101 (MQ=255)
       gACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCAtt                                                                                          >  1:3855963/1‑101 (MQ=255)
         ccAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTcc                                                                                        <  1:3855179/101‑1 (MQ=255)
           aGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCa                                                                                      <  2:3855356/101‑1 (MQ=255)
             tAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCaaa                                                                                    >  2:3855970/1‑101 (MQ=255)
              aGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAAt                                                                                   <  2:3855593/101‑1 (MQ=255)
              aGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAAt                                                                                   >  1:3855971/1‑101 (MQ=255)
              aGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAAt                                                                                   <  1:3855594/101‑1 (MQ=255)
                aTCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGa                                                                                 <  1:3855318/101‑1 (MQ=255)
                aTCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGa                                                                                 >  2:3855977/1‑101 (MQ=255)
                aTCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGa                                                                                 >  1:3855975/1‑101 (MQ=255)
                 tCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAg                                                                                <  2:3855453/101‑1 (MQ=255)
                  cAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGc                                                                               <  1:3855682/101‑1 (MQ=255)
                   aaaTAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCg                                                                              >  1:3855985/1‑101 (MQ=255)
                    aaTAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGt                                                                             <  2:3855448/101‑1 (MQ=255)
                    aaTAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGt                                                                             >  2:3855989/1‑101 (MQ=255)
                       aaaaaCAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGcc                                                                          >  1:3855994/1‑101 (MQ=255)
                        aaaaCAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCa                                                                         >  1:3855997/1‑101 (MQ=255)
                         aaaCAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAg                                                                        >  2:3855999/1‑101 (MQ=255)
                          aaCAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGt                                                                       >  1:3856002/1‑101 (MQ=255)
                          aaCAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGt                                                                       <  1:3855672/101‑1 (MQ=255)
                           aCAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGtt                                                                      <  1:3855515/101‑1 (MQ=255)
                            cAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTa                                                                     >  2:3856005/1‑101 (MQ=255)
                             aGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCGATTCCCAAATGAGCGTGCCAGTTaa                                                                    <  1:3855390/101‑1 (MQ=255)
                              gcgcGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAg                                                                   >  2:3856009/1‑101 (MQ=255)
                               cgcgAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAgg                                                                  >  1:3856010/1‑101 (MQ=255)
                                gcgAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGc                                                                 <  1:3855576/101‑1 (MQ=255)
                                  gagaATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTg                                                               >  1:3856014/1‑101 (MQ=255)
                                   agaATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGa                                                              >  2:3856016/1‑101 (MQ=255)
                                   agaATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGa                                                              >  1:3856019/1‑101 (MQ=255)
                                     aaTAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATc                                                            >  2:3856023/1‑101 (MQ=255)
                                     aaTAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATc                                                            <  1:3855609/101‑1 (MQ=255)
                                      aTAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTa                                                                     >  1:3856025/1‑91 (MQ=255)
                                       tAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATccc                                                          <  2:3855507/101‑1 (MQ=255)
                                        aaGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATccc                                                          >  2:3856031/1‑100 (MQ=255)
                                        aaGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCcca                                                         >  1:3856028/1‑101 (MQ=255)
                                          gcagcGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCccacc                                                       >  1:3856035/1‑101 (MQ=255)
                                          gcagcGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCccacc                                                       <  2:3855646/101‑1 (MQ=255)
                                            agcGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAg                                                     >  2:3856039/1‑101 (MQ=255)
                                            agcGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAg                                                     >  1:3856041/1‑101 (MQ=255)
                                            agcGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAg                                                     <  1:3855710/101‑1 (MQ=255)
                                              cgcgcCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGaa                                                   <  2:3855222/101‑1 (MQ=255)
                                               gcgcCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAAt                                                  <  2:3855599/101‑1 (MQ=255)
                                               gcgcCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAAt                                                  <  1:3855491/101‑1 (MQ=255)
                                                cgccgcTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGcc                                                                          <  2:3855618/76‑1 (MQ=255)
                                                   cgcTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGacc                                              >  2:3856046/1‑101 (MQ=255)
                                                   cgcTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGaca                                              <  2:3855725/101‑2 (MQ=255)
                                                     cTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGaccac                                            >  1:3856049/1‑101 (MQ=255)
                                                      tGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGaccacc                                           >  2:3856051/1‑101 (MQ=255)
                                                       gCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGAccacca                                          <  2:3855691/101‑1 (MQ=255)
                                                       gCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGAccacca                                          >  1:3856055/1‑101 (MQ=255)
                                                        ccGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAg                                                     >  2:3856059/1‑89 (MQ=255)
                                                         cGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAAc                                        <  1:3855583/101‑1 (MQ=255)
                                                         cGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAAc                                        >  1:3856060/1‑101 (MQ=255)
                                                            aGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGc                                     <  2:3855632/101‑1 (MQ=255)
                                                             gCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCa                                    >  1:3856065/1‑101 (MQ=255)
                                                              cccATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGAccacca                                          >  2:3856066/1‑94 (MQ=255)
                                                              cccATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCAc                                   <  1:3855456/101‑1 (MQ=255)
                                                               ccATTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACg                                  <  1:3855629/101‑1 (MQ=255)
                                                                 aTTACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTa                                <  1:3855775/101‑1 (MQ=255)
                                                                  ttACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAg                               <  2:3855740/101‑1 (MQ=255)
                                                                  ttACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAg                               <  1:3855721/101‑1 (MQ=255)
                                                                   tACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGc                              <  1:3855527/101‑1 (MQ=255)
                                                                   tACCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGc                              <  2:3855464/101‑1 (MQ=255)
                                                                    aCCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCg                             >  1:3856071/1‑101 (MQ=255)
                                                                    aCCAGGCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCg                             >  2:3856072/1‑101 (MQ=255)
                                                                        ggCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACa                                       >  2:3856078/1‑87 (MQ=255)
                                                                        ggCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAAtg                         >  1:3856076/1‑101 (MQ=255)
                                                                        ggCTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAAtg                         <  2:3855550/101‑1 (MQ=255)
                                                                          cTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAAtgtg                       <  1:3855664/101‑1 (MQ=255)
                                                                          cTACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAAtgtg                       <  1:3855548/101‑1 (MQ=255)
                                                                           tACGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTgg                      >  1:3856083/1‑101 (MQ=255)
                                                                            aCGCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGc                     >  2:3856084/1‑101 (MQ=255)
                                                                              gCCCCATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTaa                                                                    >  2:3856089/1‑52 (MQ=255)
                                                                                  cATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAg                  <  1:3855434/98‑1 (MQ=255)
                                                                                  cATCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGa               >  1:3856090/1‑101 (MQ=255)
                                                                                   aTCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAt              <  2:3855490/101‑1 (MQ=255)
                                                                                    tCAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtc             >  2:3856094/1‑101 (MQ=255)
                                                                                     cAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAggg                >  2:3856099/1‑97 (MQ=255)
                                                                                     cAGAGAAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtcg            >  1:3856098/1‑101 (MQ=255)
                                                                                       gagaAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtcgtc          <  1:3855652/101‑1 (MQ=255)
                                                                                       gagaAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtcgtc          <  1:3855854/101‑1 (MQ=255)
                                                                                       gagaAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtcgtc          <  2:3855568/101‑1 (MQ=255)
                                                                                        agaAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtcgtcg         <  2:3855299/101‑1 (MQ=255)
                                                                                        agaAACGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGAtcgtcg         <  2:3855864/101‑1 (MQ=255)
                                                                                          aaaCGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCa       >  2:3856102/1‑101 (MQ=255)
                                                                                           aaCGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAg      <  2:3855759/101‑1 (MQ=255)
                                                                                           aaCGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAg      >  2:3856106/1‑101 (MQ=255)
                                                                                            aCGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGa     <  2:3855709/101‑1 (MQ=255)
                                                                                             cGGGGCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGAc    <  1:3855504/101‑1 (MQ=255)
                                                                                              ggggCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGACt   <  2:3855812/101‑1 (MQ=255)
                                                                                               gggCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGACTg  <  2:3855635/101‑1 (MQ=255)
                                                                                               gggCTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGACTg  <  1:3855648/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
GTTCAACGACCAGTAGATCAAATAAAAACAGCGCGAGAATAAGCAGCGCGCCGCTGCCGAAGCCCATTACCAGGCTACGCCCCATCAGAGAAACGGGGTTGATCCATTCCCAAATGAGCGTGCCAGTTAAGGCTGATCCCACCAGAATGACCACCAACAGCACGTAGCGAATGTGGCGAGGGATCGTCGCAGACTG  >  NC_000913/2298999‑2299194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A