Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I1 R1 131 334.0 15923330 99.7% 15875560 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,351,657 T→C T240A (ACG→GCG)  glpT ← sn‑glycerol 3‑phosphate:phosphate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,351,6570TC100.0% 1012.3 / NA 242T240A (ACG→GCG) glpTsn‑glycerol 3‑phosphate:phosphate antiporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (102/140);  total (102/140)

Only 100 of 244 total aligned reads displayed.

GATGCCGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGTCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCA  >  NC_000913/2351559‑2351752
                                                                                                  |                                                                                               
 aTGCCGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAg                                                                                              >  2:3942768/1‑101 (MQ=255)
  tGCCGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGc                                                                                             <  2:3942290/101‑1 (MQ=255)
   gCCGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCt                                                                                            >  1:3942771/1‑101 (MQ=255)
    ccGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTc                                                                                           <  1:3942359/101‑1 (MQ=255)
     cGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTcc                                                                                          >  2:3942773/1‑101 (MQ=255)
      gTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCt                                                                                         <  1:3942312/101‑1 (MQ=255)
       tAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTg                                                                                        >  1:3942777/1‑101 (MQ=255)
        aaCGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGt                                                                                       >  2:3942779/1‑101 (MQ=255)
        aaCGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGt                                                                                       >  1:3942780/1‑101 (MQ=255)
         aCGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGtt                                                                                      <  1:3942361/101‑1 (MQ=255)
         aCGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGtt                                                                                      >  2:3942782/1‑101 (MQ=255)
           gcagcaGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTcc                                                                                    <  2:3942439/101‑1 (MQ=255)
              gcagATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCt                                                                                 <  2:3942495/101‑1 (MQ=255)
               cagATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCtt                                                                                >  2:3942784/1‑101 (MQ=255)
                agATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCttt                                                                               <  1:3942306/101‑1 (MQ=255)
                agATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCttt                                                                               <  2:3942257/101‑1 (MQ=255)
                agATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCttt                                                                               <  1:3942400/101‑1 (MQ=255)
                  aTAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCttttt                                                                             <  2:3942404/101‑1 (MQ=255)
                  aTAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCttttt                                                                             <  1:3942454/101‑1 (MQ=255)
                   tAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTCCTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTc                                                                            <  1:3942164/101‑1 (MQ=255)
                   tAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTc                                                                            <  1:3942415/101‑1 (MQ=255)
                   tAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTc                                                                            <  1:3942258/101‑1 (MQ=255)
                    aaaCGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCg                                                                           <  1:3942393/101‑1 (MQ=255)
                     aaCGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGt                                                                          >  1:3942790/1‑101 (MQ=255)
                      aCGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGtt                                                                         <  1:3942462/101‑1 (MQ=255)
                      aCGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGtt                                                                         >  1:3942792/1‑101 (MQ=255)
                        gAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtat                                                                       >  2:3942794/1‑101 (MQ=255)
                        gAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtat                                                                       >  1:3942796/1‑101 (MQ=255)
                        gAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtat                                                                       <  1:3942351/101‑1 (MQ=255)
                         aaCACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtata                                                                      <  2:3942213/101‑1 (MQ=255)
                         aaCACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtata                                                                      <  1:3941933/101‑1 (MQ=255)
                         aaCACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtata                                                                      <  1:3942240/101‑1 (MQ=255)
                          acacGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAg                                                                     <  2:3942056/101‑1 (MQ=255)
                          acacGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAg                                                                     >  1:3942798/1‑101 (MQ=255)
                          acacGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAg                                                                     <  2:3942408/101‑1 (MQ=255)
                          acacGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAg                                                                     <  1:3942510/101‑1 (MQ=255)
                            acGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtc                                                                   <  1:3942278/101‑1 (MQ=255)
                             cGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtcg                                                                  <  1:3942497/101‑1 (MQ=255)
                              gTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtcgt                                                                 >  1:3942802/1‑101 (MQ=255)
                              gTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtcgt                                                                 <  1:3942430/101‑1 (MQ=255)
                               ttGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtcgtc                                                                <  2:3942267/101‑1 (MQ=255)
                               ttGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtcgtc                                                                <  1:3942192/101‑1 (MQ=255)
                                tggcgatggcgaTATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTcc                                                               <  1:3942383/101‑1 (MQ=255)
                                tggcgatggcgaTATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTcc                                                               <  2:3942141/101‑1 (MQ=255)
                                tggcgatggcgaTATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTcc                                                               >  2:3942804/1‑101 (MQ=255)
                                   cgatggcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGa                                                            >  1:3942806/1‑101 (MQ=255)
                                     atggcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTtata                                                                      <  2:3942447/89‑1 (MQ=255)
                                       ggcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAAt                                                        >  2:3942808/1‑101 (MQ=255)
                                        gcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATc                                                       <  2:3942371/101‑1 (MQ=255)
                                        gcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATc                                                       <  2:3942311/101‑1 (MQ=255)
                                        gcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATc                                                       <  2:3942459/101‑1 (MQ=255)
                                        gcgatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATc                                                       >  1:3942811/1‑101 (MQ=255)
                                          gatATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAt                                                     >  2:3942813/1‑101 (MQ=255)
                                            tataCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAttt                                                   <  1:3942366/101‑1 (MQ=255)
                                             ataCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAtttt                                                  <  2:3942468/101‑1 (MQ=255)
                                             ataCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAtttt                                                  <  1:3942379/101‑1 (MQ=255)
                                              taCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAttttt                                                 <  2:3942551/101‑1 (MQ=255)
                                              taCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAttttt                                                 >  1:3942817/1‑101 (MQ=255)
                                               aCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCAttttt                                                 <  2:3942452/100‑1 (MQ=255)
                                               aCCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTg                                                >  2:3942818/1‑101 (MQ=255)
                                                ccACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGt                                               >  2:3942821/1‑101 (MQ=255)
                                                ccACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGt                                               <  1:3942617/101‑1 (MQ=255)
                                                 cacaGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTa                                              <  1:3942295/101‑1 (MQ=255)
                                                 cacaGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTa                                              <  2:3942601/101‑1 (MQ=255)
                                                 cacaGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTa                                              >  1:3942822/1‑101 (MQ=255)
                                                   cagcagTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTAct                                            <  1:3942320/101‑1 (MQ=255)
                                                    agcagTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGt                                                                                       <  2:3942398/57‑1 (MQ=255)
                                                    agcagTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTActc                                           >  2:3942826/1‑101 (MQ=255)
                                                      cagTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCtt                                         <  1:3942449/101‑1 (MQ=255)
                                                      cagTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGACAATCATTTTTGTACTCtt                                         <  2:3942345/101‑1 (MQ=255)
                                                        gTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCg                                       >  2:3942828/1‑101 (MQ=255)
                                                         tttGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGa                                      >  1:3942830/1‑101 (MQ=255)
                                                            gTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcg                                   <  2:3942525/101‑1 (MQ=255)
                                                             ttCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcgg                                  <  1:3942246/101‑1 (MQ=255)
                                                             ttCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcgg                                  <  1:3942590/101‑1 (MQ=255)
                                                               cGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcggcg                                <  1:3942230/101‑1 (MQ=255)
                                                                ggCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcggcgg                               >  2:3942833/1‑101 (MQ=255)
                                                                ggCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcggc                                 <  2:3942354/99‑1 (MQ=255)
                                                                 gCAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATcggcgg                               <  1:3942340/100‑1 (MQ=255)
                                                                  cAGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCa                             >  1:3942834/1‑101 (MQ=255)
                                                                   aGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCaa                            <  2:3942382/101‑1 (MQ=255)
                                                                   aGTACGTACTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCaa                            <  1:3942489/101‑1 (MQ=255)
                                                                    gtacgtacTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAg                           >  2:3942838/1‑101 (MQ=255)
                                                                    gtacgtacTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAg                           <  2:3942515/101‑1 (MQ=255)
                                                                     tacgtacTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGc                          <  2:3942245/101‑1 (MQ=255)
                                                                     tacgtacTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCCCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGc                          >  2:3942840/1‑101 (MQ=255)
                                                                       cgtacTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCca                        >  2:3942844/1‑101 (MQ=255)
                                                                         tacTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCcaca                      >  1:3942845/1‑101 (MQ=255)
                                                                          acTGCATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAg                     >  1:3942848/1‑101 (MQ=255)
                                                                              cATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATTATTTTTGTACTCTTCGATCtgcggc                              >  1:3942853/1‑88 (MQ=255)
                                                                              cATGAAGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGAtt                 >  2:3942850/1‑101 (MQ=255)
                                                                                  aaGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCgg             >  2:3942856/1‑101 (MQ=255)
                                                                                  aaGATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCgg             >  1:3942857/1‑101 (MQ=255)
                                                                                    gATTTGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCgggg           >  2:3942861/1‑101 (MQ=255)
                                                                                      tttGCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTa         >  1:3942863/1‑101 (MQ=255)
                                                                                         gCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATcg      >  1:3942867/1‑101 (MQ=255)
                                                                                         gCTTCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATcg      >  1:3942865/1‑101 (MQ=255)
                                                                                           ttCGCCGCCAGCTCCTGTTCCGCTTTTTCGTTATAgtc                                                                   <  2:3942275/38‑1 (MQ=255)
                                                                                             cgccgcCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTCCTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGt          <  2:3942421/93‑1 (MQ=255)
                                                                                             cgccgcCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGca  <  1:3942471/101‑1 (MQ=255)
                                                                                                  |                                                                                               
GATGCCGTAACGCAGCAGATAAACGAACACGTTGGCGATGGCGATATACCACAGCAGTTTGTTCGGCAGTACGTACTGCATGAAGATTTGCTTCGCCGTCAGCTCCTGTTCCGCTTTTTCGTTATAGTCGTCCGGATAATCATTTTTGTACTCTTCGATCGGCGGCAAGCCACAGGATTGCGGGGTATCGCGCA  >  NC_000913/2351559‑2351752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A