Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I1 R1 131 334.0 15923330 99.7% 15875560 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,462,889 (C)9→10 intergenic (+243/‑123) fadL → / → yfdF long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,462,8801.C89.4% 573.0 / 60.4 160intergenic (+234/‑132)fadL/yfdFlong‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF
Reads supporting (aligned to +/- strand):  ref base . (11/6);  new base C (42/101);  total (53/107)
Fisher's exact test for biased strand distribution p-value = 5.65e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01

Only 100 of 262 total aligned reads displayed.

AATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT  >  NC_000913/2462780‑2462975
                                                                                                     |                                                                                                
 aTAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑c                                                                                                 <  1:4126518/101‑1 (MQ=255)
   aaGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccc                                                                                               >  1:4127417/1‑101 (MQ=255)
     gCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc                                                                                             <  2:4127067/101‑1 (MQ=255)
      cGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑c                                                                                           >  1:4127419/1‑101 (MQ=255)
      cGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑c                                                                                           >  2:4127420/1‑101 (MQ=255)
      cGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑c                                                                                           <  1:4126923/101‑1 (MQ=255)
           tCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccct                                                                                      <  1:4127184/101‑3 (MQ=255)
            ccACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccctg                                                                                     >  1:4127425/1‑98 (MQ=255)
            ccACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccctg                                                                                     >  2:4127426/1‑98 (MQ=255)
              acaGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccctggc                                                                                   <  1:4126775/101‑6 (MQ=255)
               caGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTa                                                                                  >  2:4127429/1‑101 (MQ=255)
                aGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTa                                                                                  <  1:4126987/101‑1 (MQ=255)
                    aaaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATtgt                                                                              <  2:4126870/101‑1 (MQ=255)
                    aaaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATtgt                                                                              >  2:4127433/1‑101 (MQ=255)
                    aaaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑cc                                                                                          >  1:4127436/1‑88 (MQ=255)
                     aaCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATtgtg                                                                             <  2:4127060/101‑1 (MQ=255)
                      aCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTgc                                                                            <  2:4126983/101‑1 (MQ=255)
                      aCCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACCTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTgc                                                                            <  2:4126926/101‑1 (MQ=255)
                       ccTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑c                                                                                                 >  1:4127440/1‑79 (MQ=255)
                          gAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTATTGTGCGCTCa                                                                       >  2:4127442/1‑101 (MQ=255)
                           aaGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTATTGTGCGCTCAt                                                                      >  2:4127444/1‑101 (MQ=255)
                            aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCAt                                                                      <  1:4127130/101‑1 (MQ=255)
                            aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  1:4127448/1‑82 (MQ=255)
                            aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑cccc                                                                                        >  1:4127450/1‑82 (MQ=255)
                             gggAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATa                                                                     <  2:4126900/101‑1 (MQ=255)
                             gggAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  2:4127452/1‑81 (MQ=255)
                              ggAAAGGCGTATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTATTGTGCGCTCATaca                                                                   >  1:4127454/1‑101 (MQ=255)
                               gAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATa                                                                     <  1:4127247/99‑1 (MQ=255)
                                aaaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTTCTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATacac                                                                  <  1:4126949/101‑1 (MQ=255)
                                  aGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTc                                                                <  1:4127285/101‑1 (MQ=255)
                                   ggCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccc                                                                                         >  1:4127458/1‑74 (MQ=255)
                                    gCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑cccc                                                                                              >  2:4127460/1‑69 (MQ=255)
                                     cATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCaaa                                                             >  1:4127462/1‑101 (MQ=255)
                                      atatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAAt                                                            <  2:4126739/101‑1 (MQ=255)
                                      atatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAAt                                                            <  1:4126844/101‑1 (MQ=255)
                                      atatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGATCATACACTCAAAt                                                            <  2:4127034/101‑1 (MQ=255)
                                      atatTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccc                                                                                         >  1:4127467/1‑71 (MQ=255)
                                        atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTa                                                          >  1:4127469/1‑101 (MQ=255)
                                        atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTa                                                          <  2:4127095/101‑1 (MQ=255)
                                        atTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑cccc                                                                                        >  2:4127470/1‑70 (MQ=255)
                                         ttttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTCtt                                                                                >  2:4127475/1‑78 (MQ=255)
                                         ttttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTaa                                                         >  2:4127473/1‑101 (MQ=255)
                                         ttttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTaa                                                         <  2:4126965/101‑1 (MQ=255)
                                          tttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGAATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTaaa                                                        <  2:4126890/101‑1 (MQ=255)
                                           ttCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccc                                                                                         >  1:4127480/1‑66 (MQ=255)
                                              aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATa                                                    <  2:4127261/101‑1 (MQ=255)
                                              aGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  2:4127483/1‑64 (MQ=255)
                                               ggCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATtgtg                                                                             >  2:4127486/1‑75 (MQ=255)
                                               ggCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAg                                                   <  2:4127023/101‑1 (MQ=255)
                                                  gTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt                                                <  1:4126813/101‑1 (MQ=255)
                                                  gTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  1:4127490/1‑60 (MQ=255)
                                                    tCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCt                                              <  2:4126849/101‑1 (MQ=255)
                                                     cTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTc                                                                        >  2:4127493/1‑74 (MQ=255)
                                                     cTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCta                                             <  1:4126898/101‑1 (MQ=255)
                                                      tGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaa                                            >  1:4127495/1‑101 (MQ=255)
                                                      tGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑cccc                                                                                        >  2:4127497/1‑56 (MQ=255)
                                                        cTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCtaaat                                          >  1:4127500/1‑101 (MQ=255)
                                                           gTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGa                                                      >  1:4127506/1‑86 (MQ=255)
                                                           gTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCCACCCCTGGCTATTGTgc                                                                            >  2:4127507/1‑64 (MQ=255)
                                                            tCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat                                      <  1:4127031/101‑1 (MQ=255)
                                                            tCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat                                      <  1:4127220/101‑1 (MQ=255)
                                                            tCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat                                      >  2:4127510/1‑101 (MQ=255)
                                                             ccTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATtgt                                                                              >  1:4127513/1‑60 (MQ=255)
                                                               ttCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑cccc                                                                                        >  1:4127517/1‑47 (MQ=255)
                                                                tctcAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGc                                  <  1:4127016/101‑1 (MQ=255)
                                                                tctcAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGc                                  <  1:4127137/101‑1 (MQ=255)
                                                                tctcAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGc                                  <  2:4127364/101‑1 (MQ=255)
                                                                tctcAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGc                                  <  2:4127123/101‑1 (MQ=255)
                                                                tctcAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  2:4127518/1‑46 (MQ=255)
                                                                 ctcAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  1:4127520/1‑45 (MQ=255)
                                                                  tcAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  2:4127522/1‑44 (MQ=255)
                                                                   cAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtt                               <  1:4127047/101‑1 (MQ=255)
                                                                   cAAAGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtt                               <  2:4126941/101‑1 (MQ=255)
                                                                    aaaGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttt                              <  1:4126863/101‑1 (MQ=255)
                                                                    aaaGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccct                                                                                      >  1:4127528/1‑42 (MQ=255)
                                                                    aaaGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑cccc                                                                                        >  2:4127527/1‑42 (MQ=255)
                                                                     aaGAGTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttt                              <  2:4127078/100‑1 (MQ=255)
                                                                     aaGAGTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  2:4127531/1‑41 (MQ=255)
                                                                      agagTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttttt                            <  2:4127165/101‑1 (MQ=255)
                                                                      agagTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttttt                           <  1:4126937/101‑1 (MQ=255)
                                                                       gagTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttttt                           <  1:4127109/101‑1 (MQ=255)
                                                                       gagTTTACTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttttt                           <  1:4126975/101‑1 (MQ=255)
                                                                        agTTTACTTTTCTGCATTTCCAGGATACT‑ccccc‑ccccc                                                                                       >  1:4127534/1‑38 (MQ=255)
                                                                             aCTTTTCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTc                                                                        >  1:4127539/1‑50 (MQ=255)
                                                                               ttttCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCt                   <  1:4127166/101‑1 (MQ=255)
                                                                               ttttCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCt                   >  2:4127541/1‑101 (MQ=255)
                                                                                 ttCTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATtgt                                                                              >  1:4127544/1‑40 (MQ=38)
                                                                                   cTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAttt               >  1:4127546/1‑101 (MQ=255)
                                                                                   cTGCATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAttt               <  1:4126970/101‑1 (MQ=255)
                                                                                    tggaTTTCCAGGATGCTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg                                   <  2:4127115/77‑1 (MQ=255)
                                                                                      cATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAt            <  2:4126826/101‑1 (MQ=255)
                                                                                      cATTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAt            <  1:4127080/101‑1 (MQ=255)
                                                                                       aTTTCCAGGATACTCCCCCC‑CCCCTGGCTATTGTgcg                                                                           >  2:4127549/1‑37 (MQ=38)
                                                                                         ttCCAGGATTCTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAg         <  2:4126494/101‑1 (MQ=255)
                                                                                           ccAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGt       <  1:4127433/101‑1 (MQ=255)
                                                                                           ccAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGt       <  1:4127000/101‑1 (MQ=255)
                                                                                           ccAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGt       <  1:4126690/101‑1 (MQ=255)
                                                                                            cAGGATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTa      <  2:4127149/101‑1 (MQ=255)
                                                                                               gATACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAata   <  1:4127087/101‑1 (MQ=255)
                                                                                                aTACTCCCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAatat  <  1:4127036/101‑1 (MQ=255)
                                                                                                     |                                                                                                
AATAAGCGGTATCCACAGACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACT‑CCCCC‑CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT  >  NC_000913/2462780‑2462975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A