Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I1 R1 131 334.0 15923330 99.7% 15875560 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,610,430 C→T A89A (GCC→GCT)  hyfH → hydrogenase 4 component H

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,610,4300CT99.7% 1280.6 / ‑4.4 296A89A (GCC→GCT) hyfHhydrogenase 4 component H
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (152/143);  total (152/144)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 296 total aligned reads displayed.

ATCCAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCCATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTGCGAAC  >  NC_000913/2610332‑2610527
                                                                                                  |                                                                                                 
 tCCAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATc                                                                                                <  2:4376136/101‑1 (MQ=255)
  ccAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATc                                                                                                >  2:4376302/1‑100 (MQ=255)
   cAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCa                                                                                              >  1:4376305/1‑101 (MQ=255)
   cAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCa                                                                                              <  1:4375919/101‑1 (MQ=255)
   cAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCa                                                                                              <  1:4375900/101‑1 (MQ=255)
    aGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAg                                                                                             >  2:4376310/1‑101 (MQ=255)
     gACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGc                                                                                            >  1:4376312/1‑101 (MQ=255)
      aCCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCt                                                                                           <  1:4375850/101‑1 (MQ=255)
        cgacgaCCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTa                                                                                         >  2:4376316/1‑101 (MQ=255)
          acgacCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTAcc                                                                                       >  1:4376319/1‑101 (MQ=255)
          acgacCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTAcc                                                                                       >  2:4376320/1‑101 (MQ=255)
           cgacCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCa                                                                                      <  1:4375866/101‑1 (MQ=255)
           cgacCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCa                                                                                      <  1:4375793/101‑1 (MQ=255)
           cgacCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCa                                                                                      <  2:4375774/101‑1 (MQ=255)
            gacCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCaa                                                                                     >  2:4376324/1‑101 (MQ=255)
              ccAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATa                                                                                   >  1:4376326/1‑101 (MQ=255)
              ccAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATa                                                                                   <  1:4376148/101‑1 (MQ=255)
              ccAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATa                                                                                   <  2:4375828/101‑1 (MQ=255)
               cAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATaa                                                                                  <  1:4375612/101‑1 (MQ=255)
                aGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATcc                                                                                               <  1:4375943/87‑1 (MQ=255)
                aGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAAc                                                                                 >  1:4376330/1‑101 (MQ=255)
                  cAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACtt                                                                               <  1:4375980/101‑1 (MQ=255)
                   aaaaTTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACttt                                                                              >  2:4376333/1‑101 (MQ=255)
                    aaaTTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTg                                                                             <  2:4375863/101‑1 (MQ=255)
                     aaTTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGa                                                                            <  2:4375716/101‑1 (MQ=255)
                     aaTTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGa                                                                            <  1:4375767/101‑1 (MQ=255)
                      aTTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGaa                                                                           >  1:4376336/1‑101 (MQ=255)
                       ttCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAAc                                                                          <  2:4375875/101‑1 (MQ=255)
                        tCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACt                                                                         <  1:4375742/101‑1 (MQ=255)
                         cgcgCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTg                                                                        <  1:4375720/101‑1 (MQ=255)
                         cgcgCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTg                                                                        >  2:4376340/1‑101 (MQ=255)
                          gcgcACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGa                                                                       <  1:4376159/101‑1 (MQ=255)
                          gcgcACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGa                                                                       >  1:4376341/1‑101 (MQ=255)
                            gcACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGAcc                                                                     >  2:4376346/1‑101 (MQ=255)
                             cACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCg                                                                    >  1:4376349/1‑101 (MQ=255)
                                cTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCa                                                                 <  2:4375987/101‑1 (MQ=255)
                                 tGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCAc                                                                >  2:4376354/1‑101 (MQ=255)
                                 tGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCAc                                                                >  1:4376355/1‑101 (MQ=255)
                                  ggCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCAcc                                                               <  2:4376183/101‑1 (MQ=255)
                                      gCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATa                                                           >  1:4376358/1‑101 (MQ=255)
                                       ctctATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATaa                                                          <  2:4375972/101‑1 (MQ=255)
                                        tctATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATaaa                                                         <  2:4376047/101‑1 (MQ=255)
                                          tATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGc                                                       >  2:4376362/1‑101 (MQ=255)
                                           aTCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGcc                                                      >  1:4376366/1‑101 (MQ=255)
                                            tCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCg                                                     >  2:4376367/1‑101 (MQ=255)
                                              tGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGAt                                                   <  2:4375847/101‑1 (MQ=255)
                                              tGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGAt                                                   <  1:4375956/101‑1 (MQ=255)
                                                gggCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGAtct                                                 <  2:4376060/101‑1 (MQ=255)
                                                 ggCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGAtctc                                                >  1:4376370/1‑101 (MQ=255)
                                                  gCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATctct                                               <  1:4375930/101‑1 (MQ=255)
                                                  gCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATctct                                               <  2:4375816/101‑1 (MQ=255)
                                                    gTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCtat                                             <  1:4375810/101‑1 (MQ=255)
                                                    gTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCtat                                             <  1:4376117/101‑1 (MQ=255)
                                                    gTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCtat                                             <  1:4376078/101‑1 (MQ=255)
                                                    gTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCtat                                             >  1:4376374/1‑101 (MQ=255)
                                                      tGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATAc                                           >  1:4376378/1‑101 (MQ=255)
                                                      tGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATAc                                           >  2:4376379/1‑101 (MQ=255)
                                                        tATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATAccc                                         <  1:4375885/101‑1 (MQ=255)
                                                         aTTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcg                                        >  1:4376384/1‑101 (MQ=255)
                                                          tttACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgc                                       <  2:4375647/101‑1 (MQ=255)
                                                          tttACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgc                                       <  1:4376201/101‑1 (MQ=255)
                                                           ttACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgcg                                      >  1:4376387/1‑101 (MQ=255)
                                                            tACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgcgc                                     >  1:4376390/1‑101 (MQ=255)
                                                            tACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgcgc                                     <  1:4375908/101‑1 (MQ=255)
                                                             aCTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgcgcg                                    >  2:4376393/1‑101 (MQ=255)
                                                             aCTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCcgcgcg                                    <  2:4375939/101‑1 (MQ=255)
                                                              cTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGa                                   >  1:4376394/1‑101 (MQ=255)
                                                                gCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACg                                 >  2:4376397/1‑101 (MQ=255)
                                                                  ggACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATCCCCGCGCGACGtt                               <  1:4376043/101‑1 (MQ=255)
                                                                  ggACGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGtt                               <  1:4375961/101‑1 (MQ=255)
                                                                     cGTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCa                            >  1:4376402/1‑101 (MQ=255)
                                                                      gTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCAt                           >  2:4376404/1‑101 (MQ=255)
                                                                      gTTGTGAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCAt                           <  2:4376009/101‑1 (MQ=255)
                                                                        tgtgAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCt                         >  1:4376408/1‑101 (MQ=255)
                                                                        tgtgAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCt                         >  2:4376410/1‑101 (MQ=255)
                                                                          tgAAGAAGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTAc                       >  1:4376413/1‑101 (MQ=255)
                                                                           gaagaaGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACa                      >  1:4376415/1‑101 (MQ=255)
                                                                           gaagaaGTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACa                      >  1:4376419/1‑101 (MQ=255)
                                                                            aagaagTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACaa                     <  1:4375894/101‑1 (MQ=255)
                                                                            aagaagTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACaa                     >  2:4376420/1‑101 (MQ=255)
                                                                             agaagTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAAc                    <  2:4376030/101‑1 (MQ=255)
                                                                              gaagTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACg                   >  2:4376425/1‑101 (MQ=255)
                                                                                agTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGtt                 >  1:4376426/1‑101 (MQ=255)
                                                                                agTGTGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGtt                 <  1:4376025/101‑1 (MQ=255)
                                                                                 gtgtGCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTg                <  2:4376099/101‑1 (MQ=255)
                                                                                  tgtgCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGc               <  1:4376061/101‑1 (MQ=255)
                                                                                    tgCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAg             >  1:4376432/1‑101 (MQ=255)
                                                                                    tgCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAg             >  2:4376431/1‑101 (MQ=255)
                                                                                     gCCCGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGc            >  1:4376436/1‑101 (MQ=255)
                                                                                       ccGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCg          >  1:4376440/1‑101 (MQ=255)
                                                                                        cGACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGt         >  2:4376442/1‑101 (MQ=255)
                                                                                         gACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGc               <  1:4376108/94‑1 (MQ=255)
                                                                                         gACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGtt        >  1:4376444/1‑101 (MQ=255)
                                                                                         gACCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGtt        <  1:4376002/101‑1 (MQ=255)
                                                                                          aCCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTg       >  2:4376448/1‑101 (MQ=255)
                                                                                          aCCAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTg       <  1:4375969/101‑1 (MQ=255)
                                                                                           ccAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTGc      <  1:4376236/101‑1 (MQ=255)
                                                                                            cAGAGCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTGc      <  2:4375910/100‑1 (MQ=255)
                                                                                             agagCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTGCGa    >  1:4376451/1‑101 (MQ=255)
                                                                                              gagCTATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCg          >  1:4376455/1‑94 (MQ=255)
                                                                                                  |                                                                                                 
ATCCAGACCGACGACCAGCAAAATTCGCGCACCTGGCAGCTCTATCTGGGGCGTTGTATTTACTGCGGACGTTGTGAAGAAGTGTGCCCGACCAGAGCCATCCAGCTTACCAATAACTTTGAACTGACCGTCACCAATAAAGCCGATCTCTATACCCGCGCGACGTTCCATCTACAACGTTGCAGCCGTTGCGAAC  >  NC_000913/2610332‑2610527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A