Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F13 I1 R1	131	334.0	15923330	99.7%	15875560	98.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,812,669	G→A	A18A (GCG→GCA)	emrB →	multidrug efflux pump membrane subunit EmrB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,812,669	0	G	A	100.0%	1448.6 / NA	336	A18A (GCG→GCA)	emrB	multidrug efflux pump membrane subunit EmrB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (181/155); total (181/155)

Only 100 of 336 total aligned reads displayed.

ACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCGCTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGCCAGG  >  NC_000913/2812571‑2812766

acgaTATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACt                                                                                                 >  1:4715059/1‑101 (MQ=255)

 cgaTATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTg                                                                                                >  1:4715063/1‑101 (MQ=255)

  gaTATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGt                                                                                               >  2:4715064/1‑101 (MQ=255)

   atatCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTc                                                                                              >  2:4715069/1‑101 (MQ=255)

    tatCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCa                                                                                             <  1:4714656/101‑1 (MQ=255)

     atCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCAc                                                                                            <  1:4714294/101‑1 (MQ=255)

     atCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCAc                                                                                            >  1:4715074/1‑101 (MQ=255)

     atCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCAc                                                                                            >  2:4715073/1‑101 (MQ=255)

      tCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACt                                                                                           >  1:4715078/1‑101 (MQ=255)

      tCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACt                                                                                           <  2:4714522/101‑1 (MQ=255)

      tCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACt                                                                                           <  2:4714453/101‑1 (MQ=255)

         tAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGc                                                                                        <  1:4714407/101‑1 (MQ=255)

         tAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGc                                                                                        <  1:4714509/101‑1 (MQ=255)

         tAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGc                                                                                        <  2:4714544/101‑1 (MQ=255)

          aaaaGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCg                                                                                       >  1:4715087/1‑101 (MQ=255)

          aaaaGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCg                                                                                       >  1:4715084/1‑101 (MQ=255)

           aaaGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGa                                                                                      <  2:4714500/101‑1 (MQ=255)

           aaaGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGa                                                                                      <  1:4714693/101‑1 (MQ=255)

           aaaGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGa                                                                                      >  2:4715089/1‑101 (MQ=255)

           aaaGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGa                                                                                      >  1:4715091/1‑101 (MQ=255)

             aGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACa                                                                                    >  1:4715096/1‑101 (MQ=255)

                tAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTc                                                                                 >  2:4715098/1‑101 (MQ=255)

                 aaCGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCa                                                                                >  1:4715101/1‑101 (MQ=255)

                 aaCGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCa                                                                                >  1:4715106/1‑101 (MQ=255)

                  aCGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCAt                                                                               <  1:4714607/101‑1 (MQ=255)

                  aCGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCAt                                                                               <  1:4714526/101‑1 (MQ=255)

                   cGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATg                                                                              >  1:4715110/1‑101 (MQ=255)

                    gCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGc                                                                             <  2:4714253/101‑1 (MQ=255)

                    gCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGc                                                                             >  2:4715111/1‑101 (MQ=255)

                    gCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGc                                                                             <  1:4714254/101‑1 (MQ=255)

                      tGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAGCTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAg                                                                           <  2:4714414/101‑1 (MQ=255)

                      tGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAg                                                                           <  1:4714598/101‑1 (MQ=255)

                      tGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAg                                                                           >  2:4715116/1‑101 (MQ=255)

                       ggCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAgg                                                                          <  1:4714550/101‑1 (MQ=255)

                        gCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGt                                                                         <  2:4714382/101‑1 (MQ=255)

                         cTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTg                                                                        <  2:4714664/101‑1 (MQ=255)

                           aaTCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCt                                                                      >  1:4715119/1‑101 (MQ=255)

                            aTCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTg                                                                     <  2:4714810/101‑1 (MQ=255)

                             tCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTTACTGGCGACATTCATGCAGGTGCTgg                                                                    >  1:4715123/1‑101 (MQ=255)

                             tCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTgg                                                                    <  2:4714640/101‑1 (MQ=255)

                              ccAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGa                                                                   >  1:4715127/1‑101 (MQ=255)

                              ccAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGa                                                                   >  2:4715130/1‑101 (MQ=255)

                               cAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGAc                                                                  <  1:4714956/101‑1 (MQ=255)

                                agagGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACt                                                                 <  2:4714629/101‑1 (MQ=255)

                                 gagGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTc                                                                >  2:4715133/1‑101 (MQ=255)

                                    gTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTccac                                                             <  1:4714801/101‑1 (MQ=255)

                                    gTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTccac                                                             <  1:4714678/101‑1 (MQ=255)

                                     tGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTccacc                                                            >  2:4715137/1‑101 (MQ=255)

                                         tgtgATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTg                                                        >  2:4715141/1‑101 (MQ=255)

                                         tgtgATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTg                                                        <  2:4714680/101‑1 (MQ=255)

                                         tgtgATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTg                                                        >  1:4715143/1‑101 (MQ=255)

                                           tgATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCt                                                      <  2:4714533/101‑1 (MQ=255)

                                            gATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTa                                                     >  2:4715148/1‑101 (MQ=255)

                                            gATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTa                                                     >  1:4715147/1‑101 (MQ=255)

                                            gATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTa                                                     <  2:4714634/101‑1 (MQ=255)

                                            gATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTa                                                     <  2:4714593/101‑1 (MQ=255)

                                              tGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAAc                                                   >  2:4715152/1‑101 (MQ=255)

                                               gCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACg                                                  >  2:4715156/1‑101 (MQ=255)

                                               gCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACg                                                  <  2:4714615/101‑1 (MQ=255)

                                                 aaCAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTg                                                >  1:4715160/1‑101 (MQ=255)

                                                     gCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGa                                            >  1:4715165/1‑101 (MQ=255)

                                                     gCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGa                                            >  2:4715168/1‑101 (MQ=255)

                                                       aaaaaCCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATc                                          >  1:4715171/1‑101 (MQ=255)

                                                         aaaCCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATccc                                        >  2:4715174/1‑101 (MQ=255)

                                                          aaCCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATcccc                                       >  2:4715178/1‑101 (MQ=255)

                                                            ccGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCAc                                     <  1:4714443/101‑1 (MQ=255)

                                                            ccGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCAc                                     >  1:4715182/1‑101 (MQ=255)

                                                             cGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACt                                    <  2:4714575/101‑1 (MQ=255)

                                                             cGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACt                                    >  2:4715183/1‑101 (MQ=255)

                                                              gCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTa                                   <  2:4714715/101‑1 (MQ=255)

                                                               cTGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTAt                                  >  2:4715186/1‑101 (MQ=255)

                                                                tGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATc                                 >  1:4715190/1‑101 (MQ=255)

                                                                tGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATc                                 >  2:4715192/1‑101 (MQ=255)

                                                                tGGAAGGCGCGCAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATc                                 <  1:4714534/101‑1 (MQ=255)

                                                                       cgcgcAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCATTATCGCCGGGa                          <  2:4714895/101‑1 (MQ=255)

                                                                       cgcgcAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGa                          <  1:4714570/101‑1 (MQ=255)

                                                                        gcgcAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGaa                         >  1:4715198/1‑101 (MQ=255)

                                                                         cgcAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAAt                        >  2:4715202/1‑101 (MQ=255)

                                                                         cgcAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAAt                        >  1:4715203/1‑101 (MQ=255)

                                                                          gcAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATc                       <  2:4714771/101‑1 (MQ=255)

                                                                           cAACTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGa                          <  2:4714466/97‑1 (MQ=255)

                                                                            aaCTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTg                     >  2:4715208/1‑101 (MQ=255)

                                                                              cTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTggg                   <  2:4714700/101‑1 (MQ=255)

                                                                              cTGGTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTggg                   >  1:4715211/1‑101 (MQ=255)

                                                                                ggTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCt                 >  2:4715216/1‑101 (MQ=255)

                                                                                ggTCATTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCt                 >  1:4715215/1‑101 (MQ=255)

                                                                                    aTTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATc             >  1:4715222/1‑101 (MQ=255)

                                                                                    aTTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATc             <  1:4714246/101‑1 (MQ=255)

                                                                                    aTTATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATc             >  2:4715223/1‑101 (MQ=255)

                                                                                      tATGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGc           >  1:4715226/1‑101 (MQ=255)

                                                                                       aTGACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCt          <  1:4714645/101‑1 (MQ=255)

                                                                                         gACGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCa        >  2:4715231/1‑101 (MQ=255)

                                                                                          aCGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAg       <  2:4714624/101‑1 (MQ=255)

                                                                                           cGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGc      <  2:4714784/101‑1 (MQ=255)

                                                                                           cGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGc      >  1:4715234/1‑101 (MQ=255)

                                                                                           cGATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGc      <  1:4714879/101‑1 (MQ=255)

                                                                                            gATTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGcc     <  2:4714922/101‑1 (MQ=255)

                                                                                             aTTGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGCCa    <  1:4714725/101‑1 (MQ=255)

                                                                                              ttGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGCCAg   <  1:4714762/101‑1 (MQ=255)

                                                                                               tGCACTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGCCAgg  >  1:4715239/1‑101 (MQ=255)

ACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCGCTGTCACTGGCGACATTCATGCAGGTGCTGGACTCCACCATTGCTAACGTGGCGATCCCCACTATCGCCGGGAATCTGGGCTCATCGCTCAGCCAGG  >  NC_000913/2812571‑2812766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A