Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F13 I1 R1	106	290.2	13814944	99.7%	13773499	98.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,423,798	G→A	Q238* (CAG→TAG)	hisP ←	lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,423,798	0	G	A	99.5%	791.1 / NA	204	Q238* (CAG→TAG)	hisP	lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (89/114); minor base T (0/1); total (89/115)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 207 total aligned reads displayed.

AAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTACCAC  >  NC_000913/2423700‑2423894

aaaaTACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAactact                                                                                                <  2:3523584/101‑1 (MQ=255)

aaaaTACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAactact                                                                                                <  2:3523688/101‑1 (MQ=255)

 aaaTACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTc                                                                                               >  2:3523964/1‑101 (MQ=255)

  aaTACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTcc                                                                                              <  1:3523685/101‑1 (MQ=255)

    tACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCgg                                                                                            <  1:3523577/101‑1 (MQ=255)

     aCTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGgc                                                                                           >  2:3523968/1‑101 (MQ=255)

       tCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGgcgc                                                                                         >  1:3523969/1‑101 (MQ=255)

       tCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGgcgc                                                                                         <  1:3523658/101‑1 (MQ=255)

         cGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGgcgcgc                                                                                       >  1:3523971/1‑101 (MQ=255)

           gCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGccc                                                                                     <  1:3523401/101‑1 (MQ=255)

           gCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGccc                                                                                     <  1:3523906/101‑1 (MQ=255)

            cAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCct                                                                                    >  2:3523973/1‑101 (MQ=255)

            cAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCct                                                                                    <  1:3523697/101‑1 (MQ=255)

              gCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCctct                                                                                  <  1:3523428/101‑1 (MQ=255)

               cGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCtctt                                                                                 <  2:3523225/101‑1 (MQ=255)

               cGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCtctt                                                                                 <  1:3523434/101‑1 (MQ=255)

                gTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCtcttc                                                                                >  1:3523977/1‑101 (MQ=255)

                gTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCtcttc                                                                                >  2:3523975/1‑101 (MQ=255)

                  tAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCtcttctt                                                                              >  1:3523980/1‑101 (MQ=255)

                       aCCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTAtt                                                                         >  1:3523984/1‑101 (MQ=255)

                        ccGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTAttt                                                                        <  1:3523598/101‑1 (MQ=255)

                         cGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTTCTCCGGCGCGCCCTCTTCTTCTAtttt                                                                       <  2:3523541/101‑1 (MQ=255)

                         cGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTAtttt                                                                       >  1:3523986/1‑101 (MQ=255)

                         cGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTAtttt                                                                       <  1:3523637/101‑1 (MQ=255)

                           gagaGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTcc                                                                     <  1:3523648/101‑1 (MQ=255)

                            agagGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGgctcg                                                                                        >  1:3523989/1‑81 (MQ=255)

                            agagGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTccc                                                                    >  2:3523988/1‑101 (MQ=255)

                              agGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCt                                                                  >  1:3523992/1‑101 (MQ=255)

                               ggAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTg                                                                 <  1:3523806/101‑1 (MQ=255)

                                 aaaTTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGAt                                                               >  2:3523995/1‑101 (MQ=255)

                                 aaaTTATTTAAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGAt                                                               >  1:3523994/1‑101 (MQ=255)

                                  aaTTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATg                                                              <  2:3523699/101‑1 (MQ=255)

                                  aaTTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATg                                                              >  1:3523999/1‑101 (MQ=255)

                                  aaTTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATg                                                              <  2:3523653/101‑1 (MQ=255)

                                  aaTTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATg                                                              >  2:3524000/1‑101 (MQ=255)

                                   attattTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAactact                                                                                                <  2:3523488/66‑1 (MQ=255)

                                   attattTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATgg                                                             <  1:3523709/101‑1 (MQ=255)

                                    ttattTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTcc                                                                     >  1:3524007/1‑92 (MQ=255)

                                    ttattTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATgga                                                            >  1:3524005/1‑101 (MQ=255)

                                    ttattTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATgga                                                            <  1:3523019/101‑1 (MQ=255)

                                     tattTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATggag                                                           <  2:3523632/101‑1 (MQ=255)

                                      attTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATggagg                                                          >  2:3524009/1‑101 (MQ=255)

                                      attTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATggagg                                                          <  1:3523587/101‑1 (MQ=255)

                                         tCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGaaa                                                       <  1:3523519/101‑1 (MQ=255)

                                         tCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGaaa                                                       <  1:3523635/101‑1 (MQ=255)

                                         tCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGaaa                                                       <  2:3523565/101‑1 (MQ=255)

                                         tCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGaaa                                                       >  2:3524011/1‑101 (MQ=255)

                                          cAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTCCGGGTTGCCAAATAACTACTCCGGCGCGcc                                                                                      >  1:3524012/1‑69 (MQ=255)

                                           aGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAAt                                                     <  2:3523880/101‑1 (MQ=255)

                                             cGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGa                                                   >  1:3524015/1‑101 (MQ=255)

                                             cGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGa                                                   <  2:3523416/101‑1 (MQ=255)

                                              gATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGAc                                                  >  1:3524017/1‑101 (MQ=255)

                                              gATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGAc                                                  >  2:3524018/1‑101 (MQ=255)

                                               aTCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACa                                                 >  2:3524021/1‑101 (MQ=255)

                                                tCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACAt                                                >  1:3524022/1‑101 (MQ=255)

                                                tCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACAt                                                <  1:3523711/101‑1 (MQ=255)

                                                tCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGAAAt                                                <  1:3523705/101‑1 (MQ=255)

                                                 cccTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATg                                               <  2:3523535/101‑1 (MQ=255)

                                                  ccTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGa                                              <  1:3523545/101‑1 (MQ=255)

                                                   cTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAg                                             <  1:3523524/101‑1 (MQ=255)

                                                   cTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAg                                             <  1:3523785/101‑1 (MQ=255)

                                                    ttAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGt                                            >  1:3524025/1‑101 (MQ=255)

                                                    ttAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGt                                            <  1:3523608/101‑1 (MQ=255)

                                                    ttAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGt                                            <  1:3523813/101‑1 (MQ=255)

                                                     tAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTa                                           >  2:3524027/1‑101 (MQ=255)

                                                     tAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTa                                           <  1:3523619/101‑1 (MQ=255)

                                                     tAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTa                                           <  2:3523620/101‑1 (MQ=255)

                                                      aaGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGaaaa                                                      >  2:3524029/1‑89 (MQ=255)

                                                        ggAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGaa                                        <  1:3523489/101‑1 (MQ=255)

                                                        ggAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGaa                                        <  2:3523659/101‑1 (MQ=255)

                                                         gAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGaaa                                       <  2:3523803/101‑1 (MQ=255)

                                                          aaCCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAAc                                      <  2:3523720/101‑1 (MQ=255)

                                                             cGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATg                                   <  2:3523482/101‑1 (MQ=255)

                                                             cGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATg                                   <  2:3523503/101‑1 (MQ=255)

                                                              gTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATgg                                  <  2:3523693/101‑1 (MQ=255)

                                                              gTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATgg                                  >  2:3524031/1‑101 (MQ=255)

                                                                  cAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAg                              >  1:3524032/1‑101 (MQ=255)

                                                                  cAGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAg                              >  2:3524035/1‑101 (MQ=255)

                                                                   aGACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGc                             >  1:3524036/1‑101 (MQ=255)

                                                                    gACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCa                            <  2:3523841/101‑1 (MQ=255)

                                                                    gACGAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCa                            >  1:3524038/1‑101 (MQ=255)

                                                                       gAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAg                         >  2:3524040/1‑101 (MQ=255)

                                                                       gAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAg                         <  1:3523589/101‑1 (MQ=255)

                                                                       gAGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAg                         <  1:3523450/101‑1 (MQ=255)

                                                                        aGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGc                        >  2:3524042/1‑101 (MQ=255)

                                                                        aGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGc                        <  1:3523567/101‑1 (MQ=255)

                                                                        aGGGCTTTGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGc                        <  2:3523726/101‑1 (MQ=255)

                                                                             tttGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCAtt                   >  1:3524044/1‑101 (MQ=255)

                                                                             tttGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCAtt                   >  1:3524046/1‑101 (MQ=255)

                                                                              ttGCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCAttt                  <  2:3523820/101‑1 (MQ=255)

                                                                                gCGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCg                >  1:3524048/1‑101 (MQ=255)

                                                                                 cGGGTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGt               <  1:3523738/101‑1 (MQ=255)

                                                                                  gggTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTg              <  2:3523741/101‑1 (MQ=255)

                                                                                    gTTGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAg            <  1:3523751/101‑1 (MQ=255)

                                                                                     ttGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAg                              >  2:3524051/1‑82 (MQ=255)

                                                                                      tGCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTc          >  1:3524052/1‑101 (MQ=255)

                                                                                       gCCAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCa         <  2:3523602/101‑1 (MQ=255)

                                                                                         cAAATAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTc          <  1:3523955/98‑1 (MQ=255)

                                                                                          aaaTAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTa      <  1:3523729/101‑1 (MQ=255)

                                                                                           aaTAACTACTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTac     <  1:3523527/101‑1 (MQ=255)

AAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTACCAC  >  NC_000913/2423700‑2423894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A