Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F13 I1 R1 116 362.0 17214306 99.7% 17162663 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,530,217 T→C intergenic (‑41/+30) ligA ← / ← zipA DNA ligase/cell division protein ZipA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,530,2170TC100.0% 1591.9 / NA 397intergenic (‑41/+30)ligA/zipADNA ligase/cell division protein ZipA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (167/230);  total (167/230)

Only 100 of 397 total aligned reads displayed.

ATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAGTCATCA  >  NC_000913/2530119‑2530314
                                                                                                  |                                                                                                 
atTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCg                                                                                                 <  1:4560026/101‑1 (MQ=255)
atTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCg                                                                                                 <  2:4560107/101‑1 (MQ=255)
atTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCg                                                                                                 >  1:4560944/1‑101 (MQ=255)
atTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCg                                                                                                 <  2:4560339/101‑1 (MQ=255)
 ttCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGa                                                                                                <  2:4560592/101‑1 (MQ=255)
 ttCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGa                                                                                                <  2:4560510/101‑1 (MQ=255)
  tCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGaa                                                                                               >  2:4560951/1‑101 (MQ=255)
  tCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGaa                                                                                               <  1:4560290/101‑1 (MQ=255)
  tCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGaa                                                                                               <  2:4560468/101‑1 (MQ=255)
  tCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGaa                                                                                               <  2:4560447/101‑1 (MQ=255)
    atgatgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAaga                                                                                             <  1:4560494/101‑1 (MQ=255)
     tgatgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGCCCGAagag                                                                                            >  1:4560958/1‑101 (MQ=255)
      gatgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAgagg                                                                                           <  2:4560244/101‑1 (MQ=255)
       atgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAgagga                                                                                          >  1:4560964/1‑101 (MQ=255)
       atgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAgagga                                                                                          <  2:4560389/101‑1 (MQ=255)
           cGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTa                                                                                      <  2:4560363/101‑1 (MQ=255)
           cGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTa                                                                                      >  1:4560970/1‑101 (MQ=255)
           cGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTa                                                                                      >  2:4560969/1‑101 (MQ=255)
            gAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTaa                                                                                     >  1:4560976/1‑101 (MQ=255)
             aaGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACTATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAAt                                                                                    <  1:4560461/101‑1 (MQ=255)
              aGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGaa                                                                                               >  2:4560977/1‑89 (MQ=255)
              aGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAaga                                                                                             <  1:4560344/91‑1 (MQ=255)
              aGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAAtt                                                                                   <  1:4560120/101‑1 (MQ=255)
                 gtcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAAttt                                                                                  <  1:4560410/99‑1 (MQ=255)
                 gtcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGc                                                                                >  2:4560984/1‑101 (MQ=255)
                  tcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAAttt                                                                                  >  1:4560987/1‑98 (MQ=255)
                  tcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGcc                                                                               <  1:4560401/101‑1 (MQ=255)
                    gtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCtt                                                                             <  2:4559982/101‑1 (MQ=255)
                    gtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCtt                                                                             <  2:4560216/101‑1 (MQ=255)
                    gtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCtt                                                                             <  2:4560376/101‑1 (MQ=255)
                      tCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTa                                                                            <  2:4560277/100‑1 (MQ=255)
                        gCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAgt                                                                         >  1:4560994/1‑101 (MQ=255)
                        gCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAgt                                                                         >  2:4560996/1‑101 (MQ=255)
                         cAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAgtg                                                                        <  2:4560164/101‑1 (MQ=255)
                          aGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAgtgt                                                                       >  1:4561001/1‑101 (MQ=255)
                          aGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAgtgt                                                                       >  2:4561003/1‑101 (MQ=255)
                            ttCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTAt                                                                     >  1:4561012/1‑101 (MQ=255)
                            ttCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTAt                                                                     >  2:4561010/1‑101 (MQ=255)
                             tCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATc                                                                    <  1:4560570/101‑1 (MQ=255)
                              cTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCa                                                                   <  2:4560411/101‑1 (MQ=255)
                               tGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAg                                                                  <  1:4559976/101‑1 (MQ=255)
                                  cAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCg                                                               >  1:4561017/1‑101 (MQ=255)
                                  cAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCg                                                               >  2:4561018/1‑101 (MQ=255)
                                  cAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCg                                                               <  2:4560211/101‑1 (MQ=255)
                                    gttgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGtt                                                             >  1:4561022/1‑101 (MQ=255)
                                      tgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTgg                                                           <  1:4560485/101‑1 (MQ=255)
                                      tgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTgg                                                           <  1:4560364/101‑1 (MQ=255)
                                       gttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGc                                                          <  2:4560427/101‑1 (MQ=255)
                                       gttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGc                                                          <  1:4560333/101‑1 (MQ=255)
                                        ttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCg                                                         >  1:4561028/1‑101 (MQ=255)
                                        ttgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCg                                                         <  1:4560699/101‑1 (MQ=255)
                                         tgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGc                                                          <  2:4560522/99‑1 (MQ=255)
                                         tgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGt                                                        >  2:4561030/1‑101 (MQ=255)
                                         tgttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGt                                                        <  2:4560498/101‑1 (MQ=255)
                                          gttCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTc                                                       <  1:4560271/101‑1 (MQ=255)
                                              gattgattCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTg                                                   >  2:4561035/1‑101 (MQ=255)
                                              gattgattCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTg                                                   <  2:4560627/101‑1 (MQ=255)
                                               attgattCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAgaggag                                                                                         <  1:4560256/62‑1 (MQ=255)
                                                ttgattCCATATCGCACCATCAATGCTAAAACCCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGAc                                                 <  2:4560561/101‑1 (MQ=255)
                                                ttgattCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAgt                                                                         >  1:4561040/1‑77 (MQ=255)
                                                  gattCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAaga                                                                                             <  1:4560507/55‑1 (MQ=255)
                                                   attCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTc                                              <  2:4560322/101‑1 (MQ=255)
                                                   attCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTc                                              <  2:4560544/101‑1 (MQ=255)
                                                   attCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTc                                              >  2:4561044/1‑101 (MQ=255)
                                                    ttCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTcg                                             <  1:4560637/101‑1 (MQ=255)
                                                     tCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTcgc                                            <  1:4560235/101‑1 (MQ=255)
                                                      ccATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTcgcg                                           >  1:4561049/1‑101 (MQ=255)
                                                       cATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCgg                                          >  1:4561053/1‑101 (MQ=255)
                                                        atatCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGga                                         <  1:4560429/101‑1 (MQ=255)
                                                         tatCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCa                                                                   >  1:4561058/1‑74 (MQ=255)
                                                         tatCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgat                                        <  1:4560805/101‑1 (MQ=255)
                                                          atCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatg                                       >  2:4561060/1‑101 (MQ=255)
                                                            cGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatgat                                     <  2:4560554/101‑1 (MQ=255)
                                                            cGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatgat                                     >  1:4561065/1‑101 (MQ=255)
                                                                ccATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTcc                                 >  2:4561072/1‑101 (MQ=255)
                                                                ccATCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTcc                                 >  1:4561070/1‑101 (MQ=255)
                                                                  aTCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTg                               <  1:4560441/101‑1 (MQ=255)
                                                                  aTCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTg                               >  1:4561076/1‑101 (MQ=255)
                                                                   tCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTgg                              >  2:4561079/1‑101 (MQ=255)
                                                                   tCAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTgg                              <  2:4560854/101‑1 (MQ=255)
                                                                    cAATGCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGt                             <  1:4560587/101‑1 (MQ=255)
                                                                     aaTGCTAAAAACCCCCGACAAGCGGGGGTCCGAAgaggag                                                                                         >  1:4561083/1‑40 (MQ=255)
                                                                        gCTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTc                         <  2:4560516/101‑1 (MQ=255)
                                                                         cTAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTcg                        <  2:4560398/101‑1 (MQ=255)
                                                                          tAAAAACCCCCGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTcgc                       >  2:4561090/1‑101 (MQ=255)
                                                                                cccccGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTc                                                       <  1:4560313/63‑1 (MQ=255)
                                                                                cccccGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAAtt                 >  2:4561094/1‑101 (MQ=255)
                                                                                 ccccGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAAttt                <  1:4560723/101‑1 (MQ=255)
                                                                                   ccGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCt              >  2:4561098/1‑101 (MQ=255)
                                                                                   ccGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCt              <  2:4560688/101‑1 (MQ=255)
                                                                                   ccGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCt              <  2:4560299/101‑1 (MQ=255)
                                                                                    cGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTg             >  1:4561099/1‑101 (MQ=255)
                                                                                    cGACAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTg             <  1:4560602/101‑1 (MQ=255)
                                                                                      aCAAGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCg           <  1:4560683/101‑1 (MQ=255)
                                                                                        aaGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGa         >  1:4561103/1‑101 (MQ=255)
                                                                                         aGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAg        >  1:4561108/1‑101 (MQ=255)
                                                                                         aGCGGGGGTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAg        <  1:4560547/101‑1 (MQ=255)
                                                                                              gggTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAGtcatc   >  1:4561114/1‑101 (MQ=255)
                                                                                               ggTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAGtcatca  <  1:4560187/101‑1 (MQ=255)
                                                                                               ggTCCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAGtcatca  <  1:4560079/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
ATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAAACCCCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCAATTTCTGCGGAGTCATCA  >  NC_000913/2530119‑2530314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A