Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F13 I1 R1 116 362.0 17214306 99.7% 17162663 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,853,264 T→C I4T (ATC→ACC)  hypE → hydrogenase maturation protein, carbamoyl dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,853,2640TC90.8% 1138.4 / 84.8 335I4T (ATC→ACC) hypEhydrogenase maturation protein, carbamoyl dehydratase
Reads supporting (aligned to +/- strand):  ref base T (12/19);  new base C (147/157);  total (159/176)
Fisher's exact test for biased strand distribution p-value = 3.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.50e-01

Only 100 of 346 total aligned reads displayed.

ATCCTCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCAGAGCAGGAAGAT  >  NC_000913/2853166‑2853364
                                                                                                  |                                                                                                    
aTCCTCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATAccc                                                                                                    >  1:5147961/1‑101 (MQ=255)
 tCCTCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCa                                                                                                   <  2:5146991/101‑1 (MQ=255)
 tCCTCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCa                                                                                                   >  2:5147963/1‑101 (MQ=255)
   cTCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAAc                                                                                                 <  2:5147447/101‑1 (MQ=255)
    tCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACt                                                                                                <  2:5147317/101‑1 (MQ=255)
    tCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACt                                                                                                <  1:5147227/101‑1 (MQ=255)
      aaaCCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCg                                                                                              >  2:5147971/1‑101 (MQ=255)
      aaaCCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCg                                                                                              >  1:5147972/1‑101 (MQ=255)
      aaaCCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCg                                                                                              <  2:5147381/101‑1 (MQ=255)
       aaCCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGc                                                                                             >  1:5147978/1‑101 (MQ=255)
       aaCCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGc                                                                                             >  2:5147976/1‑101 (MQ=255)
         ccGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGccc                                                                                           >  2:5147983/1‑101 (MQ=255)
         ccGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGccc                                                                                           <  2:5147558/101‑1 (MQ=255)
          cgcgTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCa                                                                                          <  2:5147679/101‑1 (MQ=255)
             gTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATTCCCAACTCGCCCACgg                                                                                       <  2:5147294/101‑1 (MQ=255)
             gTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACgg                                                                                       <  2:5147478/101‑1 (MQ=255)
              tttGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGt                                                                                      >  1:5147986/1‑101 (MQ=255)
               ttGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCAc                                                                                         <  1:5147413/97‑1 (MQ=255)
               ttGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTa                                                                                     <  1:5147439/101‑1 (MQ=255)
                tGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAg                                                                                    >  1:5147991/1‑101 (MQ=255)
                tGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAg                                                                                    <  1:5147385/101‑1 (MQ=255)
                 ggTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAgc                                                                                   >  2:5147992/1‑101 (MQ=255)
                  gTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAgcg                                                                                  <  1:5147296/101‑1 (MQ=255)
                   tGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTa                                                                                     <  2:5147467/97‑1 (MQ=255)
                     cgcTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAgcggcg                                                                               <  1:5147539/101‑1 (MQ=255)
                       cTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCaa                                                                                                  <  1:5147425/80‑1 (MQ=255)
                       cTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCggcggc                                                                             >  2:5147999/1‑101 (MQ=255)
                        tGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGcc                                                                            >  2:5148002/1‑101 (MQ=255)
                        tGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGcc                                                                            <  1:5147183/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           <  2:5147329/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           <  2:5147269/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           <  2:5147823/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           <  1:5147011/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           <  1:5147518/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           <  1:5147556/101‑1 (MQ=255)
                         gATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCa                                                                           >  1:5148004/1‑101 (MQ=255)
                          aTGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAg                                                                          <  2:5147438/101‑1 (MQ=255)
                            ggTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGc                                                                        <  1:5147504/101‑1 (MQ=255)
                               ttCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGc                                                                        >  2:5148010/1‑98 (MQ=255)
                               ttCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGAt                                                                     <  2:5147488/101‑1 (MQ=255)
                               ttCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGAt                                                                     >  1:5148008/1‑101 (MQ=255)
                                  ctccGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATgca                                                                  >  2:5148015/1‑101 (MQ=255)
                                  ctccGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATgca                                                                  <  1:5147457/101‑1 (MQ=255)
                                   tccGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATgcag                                                                 <  1:5147668/101‑1 (MQ=255)
                                     cGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAgcggcg                                                                               >  1:5148021/1‑85 (MQ=255)
                                     cGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAg                                                                          >  2:5148020/1‑90 (MQ=255)
                                      gAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCaa                                                              >  1:5148024/1‑101 (MQ=255)
                                        aGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAAtt                                                            <  2:5147796/101‑1 (MQ=255)
                                         ggAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTa                                                           >  2:5148030/1‑101 (MQ=255)
                                          gAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTaa                                                          <  2:5147308/101‑1 (MQ=255)
                                          gAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTaa                                                          >  1:5148032/1‑101 (MQ=255)
                                           aGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAAt                                                         <  2:5147515/101‑1 (MQ=255)
                                              gTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCaa                                                      >  1:5148037/1‑101 (MQ=255)
                                                 cgccgcGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAg                                                   >  2:5148040/1‑101 (MQ=255)
                                                  gccgcGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGc                                                  >  2:5148043/1‑101 (MQ=255)
                                                   ccgcGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGcc                                                 <  1:5147579/101‑1 (MQ=255)
                                                    cgcgTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCaa                                                      >  1:5148048/1‑95 (MQ=255)
                                                    cgcgTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCt                                                >  2:5148046/1‑101 (MQ=255)
                                                     gcgTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTg                                               >  1:5148051/1‑101 (MQ=255)
                                                     gcgTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTg                                               <  2:5147573/101‑1 (MQ=255)
                                                      cgTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGt                                              <  2:5147426/101‑1 (MQ=255)
                                                      cgTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGt                                              <  1:5147602/101‑1 (MQ=255)
                                                       gTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGtt                                             <  1:5147367/101‑1 (MQ=255)
                                                       gTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGtt                                             >  1:5148054/1‑101 (MQ=255)
                                                        tGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGttt                                            <  2:5147611/101‑1 (MQ=255)
                                                           tATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATg                                         <  2:5147584/101‑1 (MQ=255)
                                                           tATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATg                                         >  1:5148061/1‑101 (MQ=255)
                                                            aTCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATgg                                        >  2:5148062/1‑101 (MQ=255)
                                                             tCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGa                                       <  1:5147545/101‑1 (MQ=255)
                                                              cAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGc                                                                        >  2:5148067/1‑67 (MQ=255)
                                                              cAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGaa                                      <  1:5147529/101‑1 (MQ=255)
                                                               aGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAg                                     <  2:5147368/101‑1 (MQ=255)
                                                               aGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAg                                     >  1:5148068/1‑101 (MQ=255)
                                                                  aTCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCt                                  <  2:5147702/101‑1 (MQ=255)
                                                                   tCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCtt                                 <  2:5147533/101‑1 (MQ=255)
                                                                   tCGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCtt                                 <  1:5147495/101‑1 (MQ=255)
                                                                    cGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCttt                                <  2:5147620/101‑1 (MQ=255)
                                                                    cGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCttt                                >  1:5148075/1‑101 (MQ=255)
                                                                    cGTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCttt                                <  1:5147653/101‑1 (MQ=255)
                                                                     gTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTg                               >  2:5148078/1‑101 (MQ=255)
                                                                     gTCAGCAGGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTg                               >  1:5148079/1‑101 (MQ=255)
                                                                        agcagGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGGTTATGGAAGCCTTTGCCa                            >  1:5148085/1‑101 (MQ=255)
                                                                         gcagGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTTcc                             >  2:5148086/1‑99 (MQ=255)
                                                                          cagGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGcc                                                                            >  2:5148090/1‑51 (MQ=255)
                                                                          cagGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGt                                              <  1:5147723/81‑1 (MQ=255)
                                                                           agGAGAGTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAAcc                         <  2:5147547/101‑1 (MQ=255)
                                                                             gagaGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCg                       >  1:5148094/1‑101 (MQ=255)
                                                                               gagTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGc                                                                        >  2:5148097/1‑50 (MQ=255)
                                                                               gagTGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtg                     <  1:5147615/101‑1 (MQ=255)
                                                                                  tGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtggct                  <  1:5147480/101‑1 (MQ=255)
                                                                                  tGAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtggct                  >  2:5148103/1‑101 (MQ=255)
                                                                                   gAAGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtg                     >  1:5148106/1‑97 (MQ=255)
                                                                                    aaGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtggctgg                >  2:5148109/1‑101 (MQ=255)
                                                                                     aGCGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtggctggc               <  1:5147769/101‑1 (MQ=255)
                                                                                       cGTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCag             >  2:5148113/1‑101 (MQ=255)
                                                                                        gTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGtggctg                 >  2:5148118/1‑96 (MQ=255)
                                                                                        gTGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCaga            >  1:5148114/1‑101 (MQ=255)
                                                                                         tGAATAATACCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCagag           <  2:5147412/101‑1 (MQ=255)
                                                                                              aataCCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCAGAGCAGGa      >  1:5148123/1‑101 (MQ=255)
                                                                                               atacCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCAGAGCAGGaa     <  1:5147327/101‑1 (MQ=255)
                                                                                                  |                                                                                                    
ATCCTCAAACCGCGTTTGGTGCGCTGATGGTTTCCTCCGAAGGAGCGTGCGCCGCGTGGTATCAGTATCGTCAGCAGGAGAGTGAAGCGTGAATAATATCCAACTCGCCCACGGTAGCGGCGGCCAGGCGATGCAGCAATTAATCAACAGCCTGTTTATGGAAGCCTTTGCCAACCCGTGGCTGGCAGAGCAGGAAGAT  >  NC_000913/2853166‑2853364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A