Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F13 I1 R1 116 362.0 17214306 99.7% 17162663 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,902,692 G→A G266D (GGT→GAT)  ygcE → putative sugar kinase YgcE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,902,6920GA99.7% 1670.3 / NA 387G266D (GGT→GAT) ygcEputative sugar kinase YgcE
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (196/190);  total (197/190)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 390 total aligned reads displayed.

CGCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGAT  >  NC_000913/2902594‑2902789
                                                                                                  |                                                                                                 
 gCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGatat                                                                                                >  1:5240247/1‑101 (MQ=255)
  cATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATAtt                                                                                               <  1:5239752/101‑1 (MQ=255)
   aTTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTc                                                                                              >  1:5240253/1‑101 (MQ=255)
   aTTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTc                                                                                              >  2:5240249/1‑101 (MQ=255)
     tgatgatgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGc                                                                                            >  1:5240258/1‑101 (MQ=255)
      gatgatgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCAGCAAACATTGCTGTATGAAGGTTACGATATTCGCa                                                                                           >  2:5240263/1‑101 (MQ=255)
       atgatgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCaa                                                                                          <  1:5239623/101‑1 (MQ=255)
        tgatgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCaaa                                                                                         >  1:5240266/1‑101 (MQ=255)
         gatgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAg                                                                                        <  2:5239823/101‑1 (MQ=255)
           tgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGc                                                                                      >  2:5240274/1‑101 (MQ=255)
           tgaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGc                                                                                      >  1:5240271/1‑101 (MQ=255)
            gaACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCa                                                                                     <  2:5239604/101‑1 (MQ=255)
               cGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCAtgt                                                                                  >  1:5240279/1‑101 (MQ=255)
                 gCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTgg                                                                                <  2:5239588/101‑1 (MQ=255)
                  cAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGa                                                                               <  1:5239471/101‑1 (MQ=255)
                  cAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGa                                                                               >  2:5240283/1‑101 (MQ=255)
                   aaaGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGAc                                                                              >  1:5240286/1‑101 (MQ=255)
                     aGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACgg                                                                            <  1:5239723/101‑1 (MQ=255)
                      gCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGa                                                                               >  2:5240294/1‑97 (MQ=255)
                      gCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGt                                                                           <  2:5239691/101‑1 (MQ=255)
                      gCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGt                                                                           >  1:5240292/1‑101 (MQ=255)
                         cTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAg                                                                        >  1:5240301/1‑101 (MQ=255)
                          tGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGCATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgc                                                                       >  2:5240302/1‑101 (MQ=255)
                            ccGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctg                                                                     <  2:5240169/101‑1 (MQ=255)
                            ccGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctg                                                                     >  2:5240308/1‑101 (MQ=255)
                            ccGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctg                                                                     <  1:5239737/101‑1 (MQ=255)
                            ccGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctg                                                                     >  1:5240309/1‑101 (MQ=255)
                              gAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctggc                                                                   >  2:5240317/1‑101 (MQ=255)
                              gAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctggc                                                                   >  1:5240315/1‑101 (MQ=255)
                               aaaGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAgctggct                                                                  <  1:5239781/101‑1 (MQ=255)
                                aaGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGTTGa                                                                         <  2:5239529/93‑1 (MQ=255)
                                 aGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGa                                                                               <  1:5239673/86‑1 (MQ=255)
                                 aGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTgc                                                                <  1:5239769/101‑1 (MQ=255)
                                 aGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTgc                                                                >  2:5240322/1‑101 (MQ=255)
                                  gATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTgcg                                                               <  2:5239992/101‑1 (MQ=255)
                                   aTCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTgcgc                                                              <  2:5239802/101‑1 (MQ=255)
                                   aTCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTgcgc                                                              <  2:5239831/101‑1 (MQ=255)
                                    tCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGcgcg                                                             >  2:5240327/1‑101 (MQ=255)
                                     ccAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGa                                                            >  1:5240329/1‑101 (MQ=255)
                                       aGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACa                                                          >  1:5240335/1‑101 (MQ=255)
                                        gTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACAt                                                         <  2:5239859/101‑1 (MQ=255)
                                         tAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATg                                                        <  2:5239636/101‑1 (MQ=255)
                                         tAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATg                                                        <  2:5239948/101‑1 (MQ=255)
                                           gCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCt                                                      <  1:5239657/101‑1 (MQ=255)
                                            cGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTa                                                     >  1:5240340/1‑101 (MQ=255)
                                            cGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTa                                                     >  2:5240341/1‑101 (MQ=255)
                                             gTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTg                                                                          <  2:5239704/79‑1 (MQ=255)
                                             gTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAg                                                    <  2:5239842/101‑1 (MQ=255)
                                              tACTGGCCGATTATGTCTTCTATTTCGCAAACATTGCTGTATGAAGGTTACGatat                                                                                                >  1:5240347/1‑56 (MQ=255)
                                                cTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCg                                                 >  2:5240349/1‑101 (MQ=255)
                                                    ccGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCg                                                 >  2:5240356/1‑97 (MQ=255)
                                                      gATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGt                                           >  1:5240359/1‑101 (MQ=255)
                                                      gATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGt                                           <  2:5239930/101‑1 (MQ=255)
                                                      gATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGt                                           <  2:5239672/101‑1 (MQ=255)
                                                        ttATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTa                                         <  2:5239783/101‑1 (MQ=255)
                                                         tATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTaa                                        >  2:5240362/1‑101 (MQ=255)
                                                         tATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTaa                                        <  1:5239534/101‑1 (MQ=255)
                                                           tGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAAtt                                      >  1:5240367/1‑101 (MQ=255)
                                                             tcttctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAAtt                                      >  2:5240372/1‑99 (MQ=255)
                                                              cttctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAg                                   <  1:5239375/101‑1 (MQ=255)
                                                              cttctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAg                                   <  1:5239974/101‑1 (MQ=255)
                                                              cttctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAg                                   >  1:5240374/1‑101 (MQ=255)
                                                                tctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGa                                 >  2:5240378/1‑101 (MQ=255)
                                                                tctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGa                                 <  2:5239847/101‑1 (MQ=255)
                                                                 ctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGAt                                <  1:5239697/101‑1 (MQ=255)
                                                                 ctATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGAt                                >  1:5240381/1‑101 (MQ=255)
                                                                  tATTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATg                               <  1:5239870/101‑1 (MQ=255)
                                                                   aTTCCGCAAACATTGCTGTATGAAGGTTACGATAtt                                                                                               <  2:5239559/36‑1 (MQ=255)
                                                                   aTTCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGc                              >  2:5240386/1‑101 (MQ=255)
                                                                    ttCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGcc                             >  2:5240390/1‑101 (MQ=255)
                                                                    ttCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGcc                             >  1:5240391/1‑101 (MQ=255)
                                                                     tCCGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCa                            <  2:5239719/101‑1 (MQ=255)
                                                                       cGCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAgg                          >  2:5240397/1‑101 (MQ=255)
                                                                        gCAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAggg                         <  2:5239913/101‑1 (MQ=255)
                                                                         cAAACATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAg                                   <  2:5239791/90‑1 (MQ=255)
                                                                          aaaCATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGgcg                       >  1:5240402/1‑101 (MQ=255)
                                                                            aCATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCa                     >  2:5240405/1‑101 (MQ=255)
                                                                             cATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAg                    <  1:5239860/101‑1 (MQ=255)
                                                                             cATTGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAg                    >  1:5240408/1‑101 (MQ=255)
                                                                               ttGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGa                  >  2:5240412/1‑101 (MQ=255)
                                                                               ttGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGa                  <  2:5239957/101‑1 (MQ=255)
                                                                                tGCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGAt                 <  1:5239918/101‑1 (MQ=255)
                                                                                 gCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATc                >  2:5240419/1‑101 (MQ=255)
                                                                                 gCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATc                >  1:5240418/1‑101 (MQ=255)
                                                                                 gCTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATc                <  1:5239603/101‑1 (MQ=255)
                                                                                  cTGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCt               <  2:5239741/101‑1 (MQ=255)
                                                                                   tGTATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAAtt                                      <  1:5240018/77‑1 (MQ=255)
                                                                                     tATGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTc            >  2:5240425/1‑101 (MQ=255)
                                                                                      aTGAAGGTTACGATATTCGCAAAGGCATGTGGACGGt                                                                           >  1:5240431/1‑37 (MQ=255)
                                                                                      aTGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCa           >  2:5240430/1‑101 (MQ=255)
                                                                                       tGAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCAc          <  1:5239841/101‑1 (MQ=255)
                                                                                        gAAGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCAcc         <  1:5239807/101‑1 (MQ=255)
                                                                                         aaGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCg        >  1:5240438/1‑101 (MQ=255)
                                                                                          aGGTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCgg       <  2:5240061/101‑1 (MQ=255)
                                                                                           ggTTACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGa      >  2:5240439/1‑101 (MQ=255)
                                                                                             ttACGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAg    <  1:5240094/101‑1 (MQ=255)
                                                                                               aCGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGAt  <  1:5239934/101‑1 (MQ=255)
                                                                                               aCGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGAt  <  1:5240002/101‑1 (MQ=255)
                                                                                               aCGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGAt  >  1:5240446/1‑101 (MQ=255)
                                                                                               aCGATATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGAt  <  2:5239757/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
CGCATTGATGATGAACGGCAAAGCACTGCCGAAAGATCCAGTAGCGTACTGGCCGATTATGTCTTCTATTCCGCAAACATTGCTGTATGAAGGTTACGGTATTCGCAAAGGCATGTGGACGGTGAGCTGGCTGCGCGACATGCTAGGCGAGTCGTTAATTCAGGATGCCAGGGCGCAGGATCTTTCACCGGAAGAT  >  NC_000913/2902594‑2902789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A