Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F13 I1 R1	108	324.7	15372274	99.7%	15326157	98.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,329,734	T→C	T22A (ACG→GCG)	yfaQ ←	tandem DUF2300 domain‑containing protein YfaQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,329,734	0	T	C	99.6%	1028.1 / ‑4.3	254	T22A (ACG→GCG)	yfaQ	tandem DUF2300 domain‑containing protein YfaQ
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (118/135); total (118/136)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01

Only 100 of 269 total aligned reads displayed.

GAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCACTCCCT  >  NC_000913/2329636‑2329831

gAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGcct                                                                                                 <  2:3795623/101‑1 (MQ=255)

gAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGcct                                                                                                 >  1:3796472/1‑101 (MQ=255)

 aGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGcctc                                                                                                <  1:3795910/101‑1 (MQ=255)

  gCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCctcc                                                                                               >  2:3796478/1‑101 (MQ=255)

    gAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCctcctc                                                                                             >  1:3796482/1‑101 (MQ=255)

    gAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCctcctc                                                                                             >  2:3796481/1‑101 (MQ=255)

    gAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCctcctc                                                                                             <  1:3795949/101‑1 (MQ=255)

     aGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCtcctcc                                                                                            <  1:3795657/101‑1 (MQ=255)

     aGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCtcctcc                                                                                            <  2:3795999/101‑1 (MQ=255)

      gTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCg                                                                                           >  1:3796487/1‑101 (MQ=255)

       tCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGc                                                                                          <  2:3795823/101‑1 (MQ=255)

        cAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCa                                                                                         >  2:3796491/1‑101 (MQ=255)

         aGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCaa                                                                                        <  1:3795969/101‑1 (MQ=255)

         aGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCaa                                                                                        >  1:3796494/1‑101 (MQ=255)

          ggTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAg                                                                                       >  1:3796496/1‑101 (MQ=255)

             aaTGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAgtgt                                                                                    >  2:3796504/1‑101 (MQ=255)

              aTGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGtt                                                                                   <  2:3796053/101‑1 (MQ=255)

               tGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTg                                                                                  >  2:3796507/1‑101 (MQ=255)

               tGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTg                                                                                  <  1:3796062/101‑1 (MQ=255)

                gCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTgg                                                                                 >  1:3796509/1‑101 (MQ=255)

                 cTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGc                                                                                <  1:3796361/101‑1 (MQ=255)

                  tGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCa                                                                               <  2:3795964/101‑1 (MQ=255)

                  tGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCa                                                                               <  1:3795707/101‑1 (MQ=255)

                   gagaCTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCag                                                                              >  2:3796513/1‑101 (MQ=255)

                     gaCTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCagag                                                                            <  2:3796365/101‑1 (MQ=255)

                      aCTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGt                                                                           >  1:3796521/1‑101 (MQ=255)

                        tttGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAg                                                                                       >  2:3796524/1‑87 (MQ=255)

                        tttGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTaa                                                                         <  2:3796093/101‑1 (MQ=255)

                           ggTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCa                                                                      <  2:3796147/101‑1 (MQ=255)

                            gTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCaa                                                                     <  1:3795928/101‑1 (MQ=255)

                             tCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAAc                                                                    >  2:3796530/1‑101 (MQ=255)

                              cACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACg                                                                   >  1:3796531/1‑101 (MQ=255)

                                cGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGcc                                                                 <  1:3796026/101‑1 (MQ=255)

                                cGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGcc                                                                 <  1:3795961/101‑1 (MQ=255)

                                 gCCTGATGACGACAGCTGATACAGTTGATCGGGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCa                                                                >  2:3796535/1‑101 (MQ=255)

                                  ccTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCaa                                                               <  1:3795981/101‑1 (MQ=255)

                                   cTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAAt                                                              >  2:3796539/1‑101 (MQ=255)

                                     gatgaCGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAg                                                            <  2:3795924/101‑1 (MQ=255)

                                      atgaCGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGc                                                           <  2:3795881/101‑1 (MQ=255)

                                        gacgacAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCa                                                         >  1:3796542/1‑101 (MQ=255)

                                        gacgacAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCa                                                         <  1:3795883/101‑1 (MQ=255)

                                         acgacAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAg                                                        <  1:3796015/101‑1 (MQ=255)

                                         acgacAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAg                                                        <  2:3796154/101‑1 (MQ=255)

                                         acgacAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAg                                                        <  1:3796237/101‑1 (MQ=255)

                                         acgacAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAg                                                        <  1:3796000/101‑1 (MQ=255)

                                            acAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACg                                                     <  1:3796044/101‑1 (MQ=255)

                                             cAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAgt                                                                                      >  2:3796548/1‑67 (MQ=255)

                                             cAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGa                                                    >  1:3796547/1‑101 (MQ=255)

                                              aGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGAt                                                   <  1:3795897/101‑1 (MQ=255)

                                               gCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGAtt                                                  <  1:3796031/101‑1 (MQ=255)

                                                 tGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCt                                                <  1:3795861/101‑1 (MQ=255)

                                                 tGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCt                                                >  2:3796554/1‑101 (MQ=255)

                                                 tGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCt                                                >  1:3796551/1‑101 (MQ=255)

                                                  gATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTg                                               >  1:3796555/1‑101 (MQ=255)

                                                   aTACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTgc                                              <  2:3796309/101‑1 (MQ=255)

                                                    tACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTgcg                                             >  2:3796559/1‑101 (MQ=255)

                                                     aCAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTgcgc                                            <  1:3796169/101‑1 (MQ=255)

                                                     aCAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTgcgc                                            <  2:3796019/101‑1 (MQ=255)

                                                         ttGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGt                                        >  2:3796562/1‑101 (MQ=255)

                                                              cGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACt                                   >  2:3796564/1‑101 (MQ=255)

                                                              cGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACt                                   <  2:3796047/101‑1 (MQ=255)

                                                               gTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACtt                                  <  2:3796189/101‑1 (MQ=255)

                                                                 gctgcGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTAt                                >  2:3796567/1‑101 (MQ=255)

                                                                   tgcGCACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGAt                                                   >  1:3796570/1‑80 (MQ=255)

                                                                    gcgcACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTc                             >  2:3796572/1‑101 (MQ=255)

                                                                      gcACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCAc                           >  2:3796575/1‑101 (MQ=255)

                                                                      gcACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCAc                           >  1:3796577/1‑101 (MQ=255)

                                                                       cACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCAcc                          <  2:3795835/101‑1 (MQ=255)

                                                                       cACCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCAcc                          >  1:3796580/1‑101 (MQ=255)

                                                                        aCCGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCt                         <  2:3796257/101‑1 (MQ=255)

                                                                         ccGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTg                        <  1:3796092/101‑1 (MQ=255)

                                                                         ccGCGCAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTg                        >  1:3796583/1‑101 (MQ=255)

                                                                           gcgcAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCt                                                <  1:3795848/75‑1 (MQ=255)

                                                                           gcgcAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCa                      >  2:3796587/1‑101 (MQ=255)

                                                                            cgcAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCAt                     <  1:3796195/101‑1 (MQ=255)

                                                                            cgcAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCAt                     <  1:3796306/101‑1 (MQ=255)

                                                                            cgcAGCACCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCAt                     >  1:3796588/1‑101 (MQ=255)

                                                                             gcagcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATc                    <  1:3796151/101‑1 (MQ=255)

                                                                              cagcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATcc                   >  1:3796591/1‑101 (MQ=255)

                                                                               agcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATccc                  >  1:3796594/1‑101 (MQ=255)

                                                                               agcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATccc                  <  2:3796277/101‑1 (MQ=255)

                                                                               agcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATccc                  <  2:3796106/101‑1 (MQ=255)

                                                                                gcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCg                 <  2:3796069/101‑1 (MQ=255)

                                                                                gcaCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCg                 >  1:3796597/1‑101 (MQ=255)

                                                                                 caCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCgg                <  1:3796476/101‑1 (MQ=255)

                                                                                  aCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGt               >  2:3796600/1‑101 (MQ=255)

                                                                                  aCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGt               >  1:3796601/1‑101 (MQ=255)

                                                                                  aCCAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGt               <  1:3796081/101‑1 (MQ=255)

                                                                                    cAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGt               <  1:3796120/99‑1 (MQ=255)

                                                                                    cAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTcc             >  2:3796605/1‑101 (MQ=255)

                                                                                    cAGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTcc             <  1:3796229/101‑1 (MQ=255)

                                                                                     aGTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCa            >  1:3796606/1‑101 (MQ=255)

                                                                                      gTTGTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCg                 <  1:3796009/95‑1 (MQ=255)

                                                                                       ttGTAACGGCGCCTCCGCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCAtt          <  2:3796135/101‑1 (MQ=255)

                                                                                         gTAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCa        >  2:3796609/1‑101 (MQ=255)

                                                                                          tAACGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCAc       <  1:3796035/101‑1 (MQ=255)

                                                                                            aCGGCGCCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTTACCTGCATCCCGGTCCATTCACTc     >  2:3796613/1‑101 (MQ=255)

                                                                                               gcgcCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCACTCCCt  <  1:3796105/101‑1 (MQ=255)

                                                                                               gcgcCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCACTCCCt  >  1:3796617/1‑101 (MQ=255)

                                                                                               gcgcCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCACTCCCt  <  2:3795993/101‑1 (MQ=255)

GAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAGAGTAACCAACGCCAATAGCCAGACGATTCTGCGCCAGTTCACTTATTTCACCTGCATCCCGGTCCATTCACTCCCT  >  NC_000913/2329636‑2329831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A