Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F13 I1 R1 108 324.7 15372274 99.7% 15326157 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,387,912 (T)6→7 coding (515/717 nt) yfbN ← uncharacterized protein YfbN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,387,9061.T96.2% 1222.4 / 33.1 289coding (521/717 nt)yfbNuncharacterized protein YfbN
Reads supporting (aligned to +/- strand):  ref base . (7/4);  new base T (134/144);  total (141/148)
Fisher's exact test for biased strand distribution p-value = 3.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 320 total aligned reads displayed.

ACAATGTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑TTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCCCAACCA  >  NC_000913/2387806‑2388001
                                                                                                     |                                                                                               
acaATGTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCa                                                                                                  <  1:3889851/101‑1 (MQ=255)
acaATGTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCa                                                                                                  >  1:3890734/1‑101 (MQ=255)
 caATGTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑t                                                                                                >  2:3890737/1‑101 (MQ=255)
    tGTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑tttt                                                                                             <  1:3890422/101‑1 (MQ=255)
     gTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑ttttt                                                                                            >  1:3890740/1‑101 (MQ=255)
        ttatAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑tttttttg                                                                                         >  1:3890744/1‑99 (MQ=255)
         tataAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑TTTTTTtgg                                                                                        <  2:3890099/101‑1 (MQ=255)
          ataAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑tttttttg                                                                                         >  1:3890748/1‑97 (MQ=255)
           taAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑TTTTTTtgggc                                                                                      >  2:3890752/1‑99 (MQ=255)
           taAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑TTTTTTtgggc                                                                                      >  2:3890749/1‑99 (MQ=255)
             aGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGa                                                                                     <  2:3890066/101‑1 (MQ=255)
              gCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAg                                                                                    >  1:3890757/1‑101 (MQ=255)
              gCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAg                                                                                    <  1:3890352/101‑1 (MQ=255)
               cATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGt                                                                                   <  1:3890025/101‑1 (MQ=255)
               cATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGt                                                                                   <  1:3890237/101‑1 (MQ=255)
                aTTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGtt                                                                                  >  1:3890762/1‑101 (MQ=255)
                aTTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGtt                                                                                  >  1:3890765/1‑101 (MQ=255)
                aTTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGtt                                                                                  <  2:3889872/101‑1 (MQ=255)
                aTTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGtt                                                                                  >  2:3890760/1‑101 (MQ=255)
                 ttttGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTc                                                                                 <  2:3890124/101‑1 (MQ=255)
                 ttttGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGAGAGTTc                                                                                 >  1:3890769/1‑101 (MQ=255)
                  tttGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCt                                                                                <  1:3890491/101‑1 (MQ=255)
                    tGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑tttttttg                                                                                         >  1:3890773/1‑87 (MQ=255)
                     gAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaat                                                                             <  1:3890404/101‑1 (MQ=255)
                      aaTATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaata                                                                            <  2:3890204/101‑1 (MQ=255)
                      aaTATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaata                                                                            >  2:3890775/1‑101 (MQ=255)
                      aaTATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaata                                                                            <  2:3890021/101‑1 (MQ=255)
                      aaTATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaata                                                                            <  1:3890263/101‑1 (MQ=255)
                       atatGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaataa                                                                           <  2:3890408/101‑1 (MQ=255)
                       atatGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCtaataa                                                                           >  1:3890778/1‑101 (MQ=255)
                         atGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAAcc                                                                         >  1:3890783/1‑101 (MQ=255)
                         atGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAAcc                                                                         <  2:3890082/101‑1 (MQ=255)
                          tGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAAccc                                                                        >  2:3890785/1‑101 (MQ=255)
                           gTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAAcccc                                                                       <  2:3890414/101‑1 (MQ=255)
                            tCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCa                                                                      >  2:3890789/1‑101 (MQ=255)
                             cATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCaa                                                                     >  1:3890791/1‑101 (MQ=255)
                              aTCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCg                                                                                      >  1:3890796/1‑83 (MQ=255)
                              aTCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCaaa                                                                    >  2:3890795/1‑101 (MQ=255)
                                 ctctGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCt                                                                 <  2:3890326/101‑1 (MQ=255)
                                   ctGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTg                                                               >  1:3890799/1‑101 (MQ=255)
                                    tGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGc                                                              <  1:3890639/101‑1 (MQ=255)
                                     gTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCa                                                             <  1:3890452/101‑1 (MQ=255)
                                      tAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCaa                                                            <  1:3890303/101‑1 (MQ=255)
                                      tAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCaa                                                            >  2:3890804/1‑101 (MQ=255)
                                        aTCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAAtt                                                          <  1:3890327/101‑1 (MQ=255)
                                         tctcGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTg                                                         <  2:3890598/101‑1 (MQ=255)
                                         tctcGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTg                                                         <  2:3890154/101‑1 (MQ=255)
                                         tctcGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTg                                                         >  2:3890808/1‑101 (MQ=255)
                                           tcGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCt                                                       <  1:3890283/101‑1 (MQ=255)
                                            cGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTg                                                      >  1:3890811/1‑101 (MQ=255)
                                             gTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTgg                                                     >  2:3890813/1‑101 (MQ=255)
                                              tGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGt                                                    <  2:3890234/101‑1 (MQ=255)
                                               gAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTg                                                   <  2:3890360/101‑1 (MQ=255)
                                                aaaaTTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGa                                                  >  1:3890816/1‑101 (MQ=255)
                                                aaaaTTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGa                                                  <  2:3890253/101‑1 (MQ=255)
                                                 aaaTTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAg                                                 <  1:3890392/101‑1 (MQ=255)
                                                   aTTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTa                                               >  2:3890821/1‑101 (MQ=255)
                                                     tttCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATg                                             <  1:3890528/101‑1 (MQ=255)
                                                     tttCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATg                                             <  2:3890476/101‑1 (MQ=255)
                                                      ttCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGa                                            <  2:3890194/101‑1 (MQ=255)
                                                       tCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGAt                                           <  2:3890180/101‑1 (MQ=255)
                                                         ggCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCa                                         >  1:3890827/1‑101 (MQ=255)
                                                         gcccTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCa                                         >  2:3890828/3‑101 (MQ=255)
                                                           ccTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACt                                       >  2:3890832/1‑101 (MQ=255)
                                                           ccTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACt                                       <  2:3890349/101‑1 (MQ=255)
                                                            cTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACtt                                      <  1:3890290/101‑1 (MQ=255)
                                                             ttGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACttt                                     <  2:3890323/101‑1 (MQ=255)
                                                               gTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCa                                   >  2:3890836/1‑101 (MQ=255)
                                                               gTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCa                                   >  1:3890838/1‑101 (MQ=255)
                                                                 cTTTTAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCaaa                                 <  2:3890169/101‑1 (MQ=255)
                                                                  ttttAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCaaaa                                <  1:3890191/101‑1 (MQ=255)
                                                                  ttttAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCaaaa                                >  1:3890843/1‑101 (MQ=255)
                                                                  ttttAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCaaaa                                <  2:3890225/101‑1 (MQ=255)
                                                                  ttttAGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCaaaa                                >  2:3890844/1‑101 (MQ=255)
                                                                      aGCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAata                            <  2:3890382/101‑1 (MQ=255)
                                                                       gCTCATCATATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAatat                           >  1:3890849/1‑101 (MQ=255)
                                                                         tcatcaTATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAatat                           <  1:3890578/99‑1 (MQ=255)
                                                                           atcatATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGt                                                    >  1:3890852/1‑72 (MQ=255)
                                                                             catATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCcaca                     <  2:3890293/101‑1 (MQ=255)
                                                                             catATCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCcaca                     >  2:3890855/1‑101 (MQ=255)
                                                                              atatCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCacac                    <  2:3890504/101‑1 (MQ=255)
                                                                              atatCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCacac                    >  1:3890861/1‑101 (MQ=255)
                                                                              atatCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGATGAGTATGATCACTTTCAAAAAATATCCCacac                    >  1:3890858/1‑101 (MQ=255)
                                                                                 tCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTcc                 >  2:3890866/1‑101 (MQ=255)
                                                                                 tCGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTcc                 >  1:3890867/1‑101 (MQ=255)
                                                                                  cGGATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCa                <  2:3890215/101‑1 (MQ=255)
                                                                                   ggATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAt               >  1:3890870/1‑101 (MQ=255)
                                                                                    gATTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAtt              <  2:3890271/101‑1 (MQ=255)
                                                                                     aTTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttc             <  2:3890420/101‑1 (MQ=255)
                                                                                     aTTCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttc             >  2:3890874/1‑101 (MQ=255)
                                                                                       tCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttcct           <  2:3890443/101‑1 (MQ=255)
                                                                                       tCTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttcct           <  1:3890111/101‑1 (MQ=255)
                                                                                        cTTGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttcctt          >  1:3890877/1‑101 (MQ=255)
                                                                                         ttGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttccttc         <  1:3890441/101‑1 (MQ=255)
                                                                                         ttGCAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCAttccttc         >  2:3890879/1‑101 (MQ=255)
                                                                                            cAGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCcca      >  1:3890884/1‑101 (MQ=255)
                                                                                             aGTAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCccaa     >  2:3890886/1‑101 (MQ=255)
                                                                                               tAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCccaacc   <  2:3890536/101‑1 (MQ=255)
                                                                                               tAACCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCccaacc   <  1:3890364/101‑1 (MQ=255)
                                                                                                aaCCATTTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCccaacca  <  1:3890824/101‑1 (MQ=255)
                                                                                                     |                                                                                               
ACAATGTATTATAAGCATTTTGAATATGTCATCCTCTGTAATCTCGTGAAAATTTTCGGCCTTGTCTTTTAGCTCATCATATCGGATTCTTGCAGTAACCA‑TTTTTTGGGCGAGTTCTAATAACCCCAAAGCTTGCAATTGCTGGTGAGTATGATCACTTTCAAAAAATATCCCACACTCCATTCCTTCCCAACCA  >  NC_000913/2387806‑2388001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A