Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F13 I1 R1	108	324.7	15372274	99.7%	15326157	98.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,918,003	T→C	intergenic (+190/+42)	barA → / ← gudD	sensory histidine kinase BarA/D‑glucarate dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,918,003	0	T	C	99.7%	1454.8 / NA	347	intergenic (+190/+42)	barA/gudD	sensory histidine kinase BarA/D‑glucarate dehydratase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (193/153); minor base A (1/0); total (194/153)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 356 total aligned reads displayed.

CGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACT  >  NC_000913/2917905‑2918100

cGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGcct                                                                                                 <  2:4751031/101‑1 (MQ=255)

cGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGcct                                                                                                 >  2:4751672/1‑101 (MQ=255)

  ccTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCa                                                                                               >  2:4751677/1‑101 (MQ=255)

   cTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCaa                                                                                              <  1:4751168/101‑1 (MQ=255)

    ttATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCaaa                                                                                             <  2:4751382/101‑1 (MQ=255)

    ttATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCaaa                                                                                             >  1:4751679/1‑101 (MQ=255)

     tATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAAc                                                                                            <  1:4751289/101‑1 (MQ=255)

        ccGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCgg                                                                                         >  1:4751684/1‑101 (MQ=255)

          ggCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCt                                                                                       <  2:4751292/101‑1 (MQ=255)

          ggCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCt                                                                                       <  1:4751207/101‑1 (MQ=255)

           gCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTc                                                                                      >  2:4751688/1‑101 (MQ=255)

            ccTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTcc                                                                                     >  1:4751690/1‑101 (MQ=255)

              tACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCt                                                                                       <  1:4750930/97‑1 (MQ=255)

               aCAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGa                                                                                  >  1:4751695/1‑101 (MQ=255)

                 aaaaCCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGAt                                                                                 >  2:4751702/1‑100 (MQ=255)

                 aaaaCCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATa                                                                                <  2:4751482/101‑1 (MQ=255)

                 aaaaCCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATa                                                                                >  1:4751699/1‑101 (MQ=255)

                   aaCCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATaga                                                                              <  2:4751276/101‑1 (MQ=255)

                   aaCCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATaga                                                                              >  1:4751705/1‑101 (MQ=255)

                     ccAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGc                                                                            <  1:4751297/101‑1 (MQ=255)

                     ccAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGc                                                                            <  2:4751344/101‑1 (MQ=255)

                     ccAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGc                                                                            >  1:4751710/1‑101 (MQ=255)

                        aTTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCgg                                                                         >  2:4751713/1‑101 (MQ=255)

                         ttAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggt                                                                        >  2:4751716/1‑101 (MQ=255)

                           aaaTTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttt                                                                      >  1:4751721/1‑101 (MQ=255)

                             aTTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttg                                                                    >  1:4751726/1‑101 (MQ=255)

                             aTTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttg                                                                    >  2:4751725/1‑101 (MQ=255)

                              ttCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttgg                                                                   <  1:4751256/101‑1 (MQ=255)

                               tCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAAcc                                                                                           >  1:4751731/1‑76 (MQ=255)

                                cAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttggtt                                                                 <  2:4751438/101‑1 (MQ=255)

                                cAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttggtt                                                                 >  1:4751735/1‑101 (MQ=255)

                                  aTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttggtttt                                                               >  2:4751738/1‑101 (MQ=255)

                                  aTGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCggttttggtttt                                                               <  2:4751265/101‑1 (MQ=255)

                                   tGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTc                                                              >  1:4751742/1‑101 (MQ=255)

                                    gAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCt                                                             >  1:4751745/1‑101 (MQ=255)

                                     aaTTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTg                                                            <  2:4751467/101‑1 (MQ=255)

                                      aTTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGt                                                           <  1:4751356/101‑1 (MQ=255)

                                       ttAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTc                                                          <  1:4750994/101‑1 (MQ=255)

                                        tAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCt                                                         >  1:4751751/1‑101 (MQ=255)

                                        tAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCt                                                         >  2:4751750/1‑101 (MQ=255)

                                          aaaaaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTa                                                       >  1:4751758/1‑101 (MQ=255)

                                          aaaaaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTa                                                       >  2:4751760/1‑101 (MQ=255)

                                          aaaaaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTa                                                       <  2:4751307/101‑1 (MQ=255)

                                           aaaaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGt                                                           >  2:4751766/1‑96 (MQ=255)

                                           aaaaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTaa                                                      >  1:4751762/1‑101 (MQ=255)

                                             aaTGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAACCCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACg                                                    <  2:4751339/101‑1 (MQ=255)

                                               tgatgTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa                                                  >  1:4751771/1‑101 (MQ=255)

                                                gatgTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAc                                                 <  2:4751226/101‑1 (MQ=255)

                                                 atgTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc                                                >  2:4751774/1‑101 (MQ=255)

                                                 atgTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCAcc                                                >  1:4751776/1‑101 (MQ=255)

                                                    tAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATg                                             >  1:4751782/1‑101 (MQ=255)

                                                    tAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATg                                             <  1:4751326/101‑1 (MQ=255)

                                                     aGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc                                            <  1:4751408/101‑1 (MQ=255)

                                                     aGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGc                                            >  2:4751785/1‑101 (MQ=255)

                                                       aCCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCAc                                          <  2:4751531/101‑1 (MQ=255)

                                                       aCCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCAc                                          >  1:4751788/1‑101 (MQ=255)

                                                        ccTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACg                                         >  1:4751792/1‑101 (MQ=255)

                                                         cTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACgg                                        >  2:4751794/1‑101 (MQ=255)

                                                          tGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACggg                                       <  1:4751104/101‑1 (MQ=255)

                                                           gATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCa                                           <  1:4751186/96‑1 (MQ=255)

                                                            aTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGAt                                                                                 <  2:4750985/57‑1 (MQ=255)

                                                            aTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgcg                                     <  2:4751421/101‑1 (MQ=255)

                                                            aTACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgcg                                     <  2:4751088/101‑1 (MQ=255)

                                                             tACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgcgc                                    >  2:4751802/1‑101 (MQ=255)

                                                             tACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGgcgc                                    >  1:4751799/1‑101 (MQ=255)

                                                              aCATAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCt                                   >  1:4751805/1‑101 (MQ=255)

                                                                aTAGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAAc                                                     >  2:4751811/1‑81 (MQ=255)

                                                                  aGCACAACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGtt                               >  1:4751815/1‑101 (MQ=255)

                                                                    cacaACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTAt                             <  2:4751283/101‑1 (MQ=255)

                                                                    cacaACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTAt                             >  2:4751817/1‑101 (MQ=255)

                                                                    cacaACAGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTAt                             <  1:4751458/101‑1 (MQ=255)

                                                                     acaacaGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATc                            >  1:4751821/1‑101 (MQ=255)

                                                                       aacaGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa                          >  2:4751825/1‑101 (MQ=255)

                                                                       aacaGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa                          <  1:4751433/101‑1 (MQ=255)

                                                                       aacaGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGa                          <  1:4751481/101‑1 (MQ=255)

                                                                        acaGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACg                                         >  1:4751827/1‑85 (MQ=255)

                                                                         caGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc                        <  2:4751316/101‑1 (MQ=255)

                                                                         caGGCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAAc                        <  1:4751235/101‑1 (MQ=255)

                                                                           ggCTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGt                      >  1:4751832/1‑101 (MQ=255)

                                                                             cTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCa                                                  >  1:4751837/1‑71 (MQ=255)

                                                                             cTATTTTGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTcc                    >  2:4751835/1‑101 (MQ=255)

                                                                                ttttGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagc                 >  2:4751842/1‑101 (MQ=255)

                                                                                ttttGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagc                 >  1:4751843/1‑101 (MQ=255)

                                                                                   tGCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTccagccag              <  2:4751055/101‑1 (MQ=255)

                                                                                    gCGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTcc                    >  1:4751850/1‑94 (MQ=255)

                                                                                     cGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGa            >  2:4751851/1‑101 (MQ=255)

                                                                                     cGTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGa            <  2:4751410/101‑1 (MQ=255)

                                                                                      gTTTAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGaa           >  2:4751857/1‑101 (MQ=255)

                                                                                       tttAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAAt          >  1:4751858/1‑101 (MQ=255)

                                                                                       tttAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAAt          <  2:4751181/101‑1 (MQ=255)

                                                                                       tttAGCACCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAAt          <  1:4750770/101‑1 (MQ=255)

                                                                                        ttAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATc         <  2:4751248/101‑1 (MQ=255)

                                                                                        ttAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATc         <  1:4751389/101‑1 (MQ=255)

                                                                                         tAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCa        >  1:4751862/1‑101 (MQ=255)

                                                                                         tAGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCa        <  1:4751553/101‑1 (MQ=255)

                                                                                          aGCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAg       >  2:4751865/1‑101 (MQ=255)

                                                                                           gCATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGa      <  2:4751303/101‑1 (MQ=255)

                                                                                            cATCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGAt     <  1:4751669/101‑1 (MQ=255)

                                                                                              tCAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGtt                               >  1:4751870/1‑73 (MQ=255)

                                                                                               cAGCCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACt  <  2:4751160/101‑1 (MQ=255)

CGCCTTATCCGGCCTACAAAACCAATTAAATTCAATGAATTAAAAAATGATGTAGACCTGATACATAGCACAACAGGCTATTTTGCGTTTAGCATCAGTCTCAAACCGGCTCCAGATAGAGCCGGTTTTGGTTTTCTGTCTTAACGCACCATGCACGGGCGCTTGTTATCGAACGTCCAGCCAGGAATCAGATACT  >  NC_000913/2917905‑2918100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A