Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F13 I1 R1	111	382.4	18081076	99.7%	18026832	98.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,652,086	T→C	T68A (ACA→GCA)	yfhM ←	alpha2‑macroglobulin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,652,086	0	T	C	100.0%	1406.7 / NA	337	T68A (ACA→GCA)	yfhM	alpha2‑macroglobulin
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (161/176); total (161/176)

Only 100 of 337 total aligned reads displayed.

AACGCGTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGTCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGTAACT  >  NC_000913/2651988‑2652183

aaCGCGTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCa                                                                                                 >  2:5082633/1‑101 (MQ=255)

aaCGCGTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCa                                                                                                 >  1:5082635/1‑101 (MQ=255)

  cgcgTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAg                                                                                                >  2:5082637/1‑100 (MQ=255)

  cgcgTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGc                                                                                               <  2:5082184/101‑1 (MQ=255)

    cgTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCAc                                                                                             <  1:5082029/101‑1 (MQ=255)

    cgTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCAc                                                                                             >  1:5082640/1‑101 (MQ=255)

      tGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCt                                                                                           <  1:5081982/101‑1 (MQ=255)

      tGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCt                                                                                           >  2:5082644/1‑101 (MQ=255)

        agaAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTa                                                                                         <  1:5082234/101‑1 (MQ=255)

        agaAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTa                                                                                         >  2:5082647/1‑101 (MQ=255)

         gaAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTAc                                                                                        <  1:5082058/101‑1 (MQ=255)

         gaAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTAc                                                                                        >  2:5082651/1‑101 (MQ=255)

          aaaTCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTAcc                                                                                       <  1:5082016/101‑1 (MQ=255)

           aaTCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCg                                                                                      <  1:5081834/101‑1 (MQ=255)

           aaTCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCg                                                                                      >  1:5082654/1‑101 (MQ=255)

             tCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGc                                                                                    >  1:5082658/1‑101 (MQ=255)

             tCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGc                                                                                    <  2:5082136/101‑1 (MQ=255)

              ccTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCa                                                                                   >  2:5082660/1‑101 (MQ=255)

              ccTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCa                                                                                   <  2:5082084/101‑1 (MQ=255)

                tGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCAct                                                                                 >  2:5082666/1‑101 (MQ=255)

                 gATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCActc                                                                                >  1:5082671/1‑101 (MQ=255)

                 gATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCActc                                                                                <  1:5082296/101‑1 (MQ=255)

                   tCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTg                                                                              >  1:5082675/1‑101 (MQ=255)

                   tCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTg                                                                              >  2:5082676/1‑101 (MQ=255)

                   tCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTg                                                                              <  2:5082285/101‑1 (MQ=255)

                     cGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGtt                                                                            <  1:5082164/101‑1 (MQ=255)

                     cGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGtt                                                                            <  2:5081959/101‑1 (MQ=255)

                      gggTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTg                                                                           <  2:5082126/101‑1 (MQ=255)

                       ggTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGtttg                                                                          <  1:5082276/101‑3 (MQ=255)

                       ggTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTgg                                                                          >  1:5082682/1‑101 (MQ=255)

                       ggTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGCTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTgg                                                                          >  2:5082681/1‑101 (MQ=255)

                        gTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTggg                                                                         <  2:5081879/101‑1 (MQ=255)

                        gTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTggg                                                                         <  1:5082253/101‑1 (MQ=255)

                        gTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTggg                                                                         <  1:5082109/101‑1 (MQ=255)

                        gTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTggg                                                                         <  2:5082043/101‑1 (MQ=255)

                           gagaGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCa                                                                      >  1:5082688/1‑101 (MQ=255)

                           gagaGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCa                                                                      <  2:5082385/101‑1 (MQ=255)

                           gagaGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCa                                                                      <  2:5081989/101‑1 (MQ=255)

                            agagGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAg                                                                     >  2:5082689/1‑101 (MQ=255)

                             gagGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGt                                                                    >  2:5082694/1‑101 (MQ=255)

                              agGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGtt                                                                   <  1:5082318/101‑1 (MQ=255)

                                 gATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGttttt                                                                >  1:5082697/1‑101 (MQ=255)

                                 gATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGttttt                                                                <  1:5082151/101‑1 (MQ=255)

                                 gATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGtttt                                                                 <  1:5081218/100‑1 (MQ=255)

                                  aTGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTg                                                               <  2:5081932/101‑1 (MQ=255)

                                  aTGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTg                                                               <  1:5082347/101‑1 (MQ=255)

                                   tGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGt                                                              >  1:5082700/1‑101 (MQ=255)

                                      agaACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGtctc                                                           >  2:5082702/1‑101 (MQ=255)

                                       gaACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGtctct                                                          <  2:5082583/101‑1 (MQ=255)

                                        aaCGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGtctctc                                                         <  2:5082209/101‑1 (MQ=255)

                                         aCGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCGCTCTGTTGGGCCAGTTTTTGTCTCTcc                                                        >  2:5082708/1‑101 (MQ=255)

                                          cGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCg                                                       <  2:5082355/101‑1 (MQ=255)

                                            tCAGCACCAGCGTGGCTGCACCATCAAGTGGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGc                                                     >  1:5082711/1‑101 (MQ=255)

                                              aGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCAc                                                   <  2:5082314/101‑1 (MQ=255)

                                               gCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACg                                                  <  1:5082075/101‑1 (MQ=255)

                                               gCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACg                                                  >  1:5082715/1‑101 (MQ=255)

                                                 aCCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGga                                                >  2:5082718/1‑101 (MQ=255)

                                                   cAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGgaga                                              >  1:5082722/1‑101 (MQ=255)

                                                    aGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGagag                                             >  1:5082726/1‑101 (MQ=255)

                                                       gTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGttt                                          >  1:5082730/1‑101 (MQ=255)

                                                        tGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGtttt                                         <  2:5082218/101‑1 (MQ=255)

                                                         ggCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTg                                        >  2:5082734/1‑101 (MQ=255)

                                                          gCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGc                                       <  2:5082464/101‑1 (MQ=255)

                                                            tGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTg                                     <  1:5082122/101‑1 (MQ=255)

                                                             gCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGa                                    >  1:5082738/1‑101 (MQ=255)

                                                              cACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGaa                                   <  2:5082071/101‑1 (MQ=255)

                                                              cACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGaa                                   >  2:5082739/1‑101 (MQ=255)

                                                              cACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGaa                                   <  2:5082175/101‑1 (MQ=255)

                                                              cACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGaa                                   <  2:5082261/101‑1 (MQ=255)

                                                               aCCATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAAc                                  <  1:5081958/101‑1 (MQ=255)

                                                                ccATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACt                                 >  1:5082745/1‑101 (MQ=255)

                                                                ccATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACt                                 >  2:5082744/1‑101 (MQ=255)

                                                                 cATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTc                                <  2:5081981/101‑1 (MQ=255)

                                                                 cATCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTc                                <  1:5082207/101‑1 (MQ=255)

                                                                   tCAAGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTcgc                              <  1:5082187/101‑1 (MQ=255)

                                                                     aaGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGgag                                               >  1:5082752/1‑82 (MQ=255)

                                                                     aaGTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGt                            >  2:5082750/1‑101 (MQ=255)

                                                                       gTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGttt                          <  2:5082156/101‑1 (MQ=255)

                                                                       gTTGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGttt                          <  1:5082193/101‑1 (MQ=255)

                                                                        ttGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGtttt                         <  2:5082329/101‑1 (MQ=255)

                                                                         tGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTc                        <  2:5082098/101‑1 (MQ=255)

                                                                         tGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTc                        >  1:5082758/1‑101 (MQ=255)

                                                                         tGGACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTc                        <  1:5082091/101‑1 (MQ=255)

                                                                          ggACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCt                       >  2:5082759/1‑101 (MQ=255)

                                                                           gACTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTg                      <  1:5081800/101‑1 (MQ=255)

                                                                            aCTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGa                     <  1:5082528/101‑1 (MQ=255)

                                                                             cTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGaa                    >  2:5082765/1‑101 (MQ=255)

                                                                             cTTCAGAGAGATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGaa                    >  1:5082764/1‑101 (MQ=255)

                                                                                 agagagATCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAgg                >  1:5082769/1‑101 (MQ=255)

                                                                                   agagaTCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGcc              >  1:5082773/1‑101 (MQ=255)

                                                                                    gagaTCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCg             <  1:5082365/101‑1 (MQ=255)

                                                                                      gaTCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCt           >  1:5082778/1‑101 (MQ=255)

                                                                                       aTCCAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCtt          <  2:5082723/101‑1 (MQ=255)

                                                                                         ccAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTa        >  2:5082782/1‑101 (MQ=255)

                                                                                          cAGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAg       >  1:5082783/1‑101 (MQ=255)

                                                                                           aGCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGt      <  2:5082231/101‑1 (MQ=255)

                                                                                            gCAATGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGTa     >  1:5082787/1‑101 (MQ=255)

                                                                                              aaTGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGTAAc   >  1:5082790/1‑101 (MQ=255)

                                                                                              aaTGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGTAAc   >  2:5082792/1‑101 (MQ=255)

                                                                                               aTGCCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGTAACt  <  1:5082408/101‑1 (MQ=255)

AACGCGTGAGAAATCCTGATCCGGGTCGAGAGGGATGGAGAACGTCAGCACCAGCGTGGCTGCACCATCAAGTTGGACTTCAGAGAGATCCAGCAATGTCAGCACCTTACCGGCACTCTGTTGGGCCAGTTTTTGTCTCTCCGGCACGGAGAGTTTTGCTGAACTCGCGTTTTCTGAAGAGGCCGCTTTAGTAACT  >  NC_000913/2651988‑2652183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A