Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F13 I1 R1	114	305.6	14428468	99.7%	14385182	98.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,523,807	A→T	I60N (ATC→AAC)	xapB ←	xanthosine:H(+) symporter XapB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,523,807	0	A	T	96.1%	1067.8 / 27.9	256	I60N (ATC→AAC)	xapB	xanthosine:H(+) symporter XapB
Reads supporting (aligned to +/- strand): ref base A (4/6); new base T (104/142); total (108/148)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.84e-01

Only 100 of 259 total aligned reads displayed.

CCGGATCAGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTA  >  NC_000913/2523709‑2523904

ccGGATCAGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTc                                                                                                 >  2:3830104/1‑101 (MQ=255)

 cGGATCAGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTcc                                                                                                <  2:3829880/101‑1 (MQ=255)

    aTCAGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCa                                                                                             >  2:3830107/1‑101 (MQ=255)

      cAGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCAtt                                                                                           >  2:3830110/1‑101 (MQ=255)

       aGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATta                                                                                          <  1:3829576/101‑1 (MQ=255)

       aGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATta                                                                                          >  2:3830112/1‑101 (MQ=255)

        gTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATtat                                                                                         <  2:3829631/101‑1 (MQ=255)

        gTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATtat                                                                                         >  1:3830113/1‑101 (MQ=255)

        gTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATtat                                                                                         <  2:3829650/101‑1 (MQ=255)

        gTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATtat                                                                                         <  1:3829742/101‑1 (MQ=255)

         ttACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATtata                                                                                        <  1:3829723/101‑1 (MQ=255)

          tACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCTCCATTATAc                                                                                       <  1:3829417/101‑1 (MQ=255)

          tACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGATCCCCATTATAc                                                                                       >  2:3830116/1‑101 (MQ=255)

            cGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCa                                                                                     <  2:3829820/101‑1 (MQ=255)

            cGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCa                                                                                     <  2:3829741/101‑1 (MQ=255)

            cGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCa                                                                                     >  1:3830119/1‑101 (MQ=255)

            cGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCa                                                                                     <  1:3829520/101‑1 (MQ=255)

             ggATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAg                                                                                    <  2:3829782/101‑1 (MQ=255)

             ggATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAg                                                                                    <  1:3829677/101‑1 (MQ=255)

             ggATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAg                                                                                    <  1:3829594/101‑1 (MQ=255)

              gATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAgg                                                                                   <  1:3829704/101‑1 (MQ=255)

               aTGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGc                                                                                  >  1:3830123/1‑101 (MQ=255)

               aTGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGc                                                                                  <  1:3829778/101‑1 (MQ=255)

               aTGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGc                                                                                  <  2:3829681/101‑1 (MQ=255)

                 gCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCat                                                                                <  1:3829667/101‑1 (MQ=255)

                  ccGCATAAAAAAGTACGCCCTCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCata                                                                               <  1:3829758/101‑1 (MQ=255)

                   cGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCataa                                                                              >  2:3830125/1‑101 (MQ=255)

                   cGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCataa                                                                              <  1:3829662/101‑1 (MQ=255)

                   cGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCataa                                                                              <  1:3829599/101‑1 (MQ=255)

                     cATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCataata                                                                            >  2:3830131/1‑101 (MQ=255)

                     cATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCataata                                                                            >  1:3830128/1‑101 (MQ=255)

                      aTAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCatataat                                                                           >  1:3830132/1‑97 (MQ=255)

                      aTAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCAtaataa                                                                           <  1:3829645/101‑1 (MQ=255)

                       tAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATaataat                                                                          <  2:3829566/101‑1 (MQ=255)

                       tAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATaataat                                                                          >  1:3830135/1‑101 (MQ=255)

                        aaaaaaGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATc                                                                         <  2:3829832/101‑1 (MQ=255)

                          aaaaGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATcgc                                                                       <  2:3829856/101‑1 (MQ=255)

                           aaaGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATcgcg                                                                      >  2:3830139/1‑101 (MQ=255)

                            aaGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCgcgg                                                                     >  2:3830141/1‑101 (MQ=255)

                             aGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCgcggc                                                                    >  1:3830142/1‑101 (MQ=255)

                             aGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCgcggc                                                                    <  2:3829714/101‑1 (MQ=255)

                                     cGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCtt                                                            <  1:3829822/101‑1 (MQ=255)

                                     cGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCtt                                                            <  1:3829764/101‑1 (MQ=255)

                                      gCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCttt                                                           >  1:3830147/1‑101 (MQ=255)

                                      gCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCAATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCttt                                                           >  2:3830149/1‑101 (MQ=255)

                                       cacacaCCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTg                                                          >  1:3830151/1‑101 (MQ=255)

                                        acacacCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTgg                                                         >  2:3830154/1‑101 (MQ=255)

                                         cacacCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGa                                                        <  2:3829542/101‑1 (MQ=255)

                                         cacacCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGa                                                        >  1:3830157/1‑101 (MQ=255)

                                         cacacCAGGTGACACAGCATGGATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGa                                                        <  2:3829916/101‑1 (MQ=255)

                                          acacCAGGTGACACAGCATGTATGCCCGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGaa                                                       <  2:3829734/101‑1 (MQ=255)

                                           cacCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAAc                                                      >  2:3830159/1‑101 (MQ=255)

                                            acCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACt                                                     >  1:3830160/1‑101 (MQ=255)

                                             ccAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTg                                                    >  1:3830164/1‑101 (MQ=255)

                                             ccAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTg                                                    <  2:3829586/101‑1 (MQ=255)

                                             ccAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTg                                                    <  2:3829893/101‑1 (MQ=255)

                                                ggTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTaa                                                 <  1:3829881/101‑1 (MQ=255)

                                                ggTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTaa                                                 <  1:3829848/101‑1 (MQ=255)

                                                 gTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTaaa                                                >  2:3830166/1‑101 (MQ=255)

                                                   gACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAAcc                                              <  1:3829840/101‑1 (MQ=255)

                                                   gACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAAcc                                              >  1:3830168/1‑101 (MQ=255)

                                                     cacaGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCAt                                            >  2:3830170/1‑101 (MQ=255)

                                                     cacaGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCAt                                            <  2:3829846/101‑1 (MQ=255)

                                                       caGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGc                                          <  2:3829940/101‑1 (MQ=255)

                                                       caGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGc                                          <  2:3829812/101‑1 (MQ=255)

                                                        aGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGcc                                         <  1:3829926/101‑1 (MQ=255)

                                                         gCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCa                                        <  1:3829720/101‑1 (MQ=255)

                                                          cATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCaa                                       >  2:3830175/1‑101 (MQ=255)

                                                           aTGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAAc                                      >  1:3830176/1‑101 (MQ=255)

                                                            tGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACa                                     <  2:3829888/101‑1 (MQ=255)

                                                            tGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACa                                     <  1:3829798/101‑1 (MQ=255)

                                                             gTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACAt                                    <  1:3829491/101‑1 (MQ=255)

                                                             gTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACAt                                    <  1:3829967/101‑1 (MQ=255)

                                                             gTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACAt                                    <  2:3829607/101‑1 (MQ=255)

                                                               aTGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTa                                  <  2:3829708/101‑1 (MQ=255)

                                                               aTGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTa                                  <  2:3829492/101‑1 (MQ=255)

                                                                tGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAg                                 >  1:3830181/1‑101 (MQ=255)

                                                                   aCGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAgcgc                              >  2:3830183/1‑101 (MQ=255)

                                                                    cGTTCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGcc                             >  1:3830184/1‑101 (MQ=255)

                                                                       tCTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGt                          <  1:3829907/101‑1 (MQ=255)

                                                                        cTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTg                         >  1:3830187/1‑101 (MQ=255)

                                                                        cTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTg                         <  2:3829864/101‑1 (MQ=255)

                                                                        cTGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTg                         <  1:3829744/101‑1 (MQ=255)

                                                                         tGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGa                        >  1:3830190/1‑101 (MQ=255)

                                                                         tGCGCGCAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGa                        <  2:3829805/101‑1 (MQ=255)

                                                                          gcgcgcAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGaa                       <  1:3829861/101‑1 (MQ=255)

                                                                             cgcAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATg                    >  2:3830192/1‑101 (MQ=255)

                                                                              gcAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGa                   >  2:3830195/1‑101 (MQ=255)

                                                                               cAGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGaa                  <  2:3829399/101‑1 (MQ=255)

                                                                                aGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAag                 <  1:3830052/101‑1 (MQ=255)

                                                                                aGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAag                 <  1:3829951/101‑1 (MQ=255)

                                                                                aGCCATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAag                 >  2:3830198/1‑101 (MQ=255)

                                                                                   cATTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGt              >  1:3830200/1‑101 (MQ=255)

                                                                                    aTTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGaaa                      >  1:3830203/1‑92 (MQ=255)

                                                                                    aTTTGTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTa             <  1:3829683/101‑1 (MQ=255)

                                                                                        gTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTaa         <  1:3829815/101‑1 (MQ=255)

                                                                                        gTCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTaa         >  2:3830206/1‑101 (MQ=255)

                                                                                         tCTGCGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAAt        >  1:3830208/1‑101 (MQ=255)

                                                                                             cGATGTTCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATg    <  1:3829792/101‑1 (MQ=255)

                                                                                               atgttCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTa  >  1:3830212/1‑101 (MQ=255)

CCGGATCAGTTACGGATGCCGCATAAAAAAGTACGCCCGCACACACCAGGTGACACAGCATGTATGCACGTTCTGCGCGCAGCCATTTGTCTGCGATGATCCCCATTATACCAGGCATAATAATCGCGGCGATCCCTTTGGAACTGTAAACCATGCCAACATTAGCGCCGGTGAAATGAAGAGTATTAATCATGTA  >  NC_000913/2523709‑2523904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A