Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F13 I1 R1 84 286.4 14512654 99.7% 14469116 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,405,816 G→A L276L (CTG→TTG)  lrhA ← DNA‑binding transcriptional dual regulator LrhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,405,8160GA100.0% 1257.1 / NA 298L276L (CTG→TTG) lrhADNA‑binding transcriptional dual regulator LrhA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (137/161);  total (137/161)

Only 100 of 298 total aligned reads displayed.

TTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTC  >  NC_000913/2405718‑2405913
                                                                                                  |                                                                                                 
 tcaatcaaCAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTc                                                                                                >  1:3887949/1‑101 (MQ=255)
  caatcaaCAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCa                                                                                               <  1:3887310/101‑1 (MQ=255)
     tcaaCAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCatta                                                                                            >  2:3887954/1‑101 (MQ=255)
       aacaaTGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCattatt                                                                                          >  1:3887957/1‑101 (MQ=255)
       aacaaTGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCattatt                                                                                          <  2:3887385/101‑1 (MQ=255)
        acaaTGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCatta                                                                                            <  2:3887489/98‑1 (MQ=255)
         caaTGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTAc                                                                                        <  2:3887636/101‑1 (MQ=255)
           aTGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTg                                                                                      >  1:3887962/1‑101 (MQ=255)
           aTGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTg                                                                                      <  1:3887563/101‑1 (MQ=255)
            tGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTgg                                                                                     >  2:3887964/1‑101 (MQ=255)
              aaTCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGAc                                                                                   <  2:3887453/101‑1 (MQ=255)
               atcatcCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACg                                                                                  >  2:3887970/1‑101 (MQ=255)
                tcatcCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACgg                                                                                 >  1:3887971/1‑101 (MQ=255)
                  atcCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGAt                                                                               >  1:3887977/1‑101 (MQ=255)
                   tcCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATc                                                                              >  1:3887980/1‑101 (MQ=255)
                   tcCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATc                                                                              <  1:3887693/101‑1 (MQ=255)
                   tcCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATc                                                                              <  2:3887696/101‑1 (MQ=255)
                     cccTTCCGGAGCAGACATTGGGCTGTATTGCCTCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACgg                                                                                 >  2:3887984/1‑96 (MQ=255)
                     cccTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCAt                                                                            >  1:3887983/1‑101 (MQ=255)
                     cccTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCAt                                                                            <  1:3887509/101‑1 (MQ=255)
                      ccTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATa                                                                           <  2:3887321/101‑1 (MQ=255)
                      ccTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATa                                                                           <  1:3887665/101‑1 (MQ=255)
                       cTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAg                                                                          >  2:3887989/1‑101 (MQ=255)
                        ttCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGc                                                                         <  1:3887772/101‑1 (MQ=255)
                        ttCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGc                                                                         <  2:3887207/101‑1 (MQ=255)
                        ttCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGc                                                                         >  2:3887992/1‑101 (MQ=255)
                          ccGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGcac                                                                       >  1:3887994/1‑101 (MQ=255)
                            ggAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAg                                                                     >  2:3887997/1‑101 (MQ=255)
                            ggAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAg                                                                     <  2:3887551/101‑1 (MQ=255)
                             gAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGc                                                                    <  1:3887108/101‑1 (MQ=255)
                              aGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCa                                                                   >  2:3888002/1‑101 (MQ=255)
                              aGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCa                                                                   <  2:3887571/101‑1 (MQ=255)
                                cAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCaaa                                                                 <  2:3887778/101‑1 (MQ=255)
                                cAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATCACTGGACGGATCATAGCACAGCaaa                                                                 >  1:3888003/1‑101 (MQ=255)
                                 aGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAat                                                                <  1:3887604/101‑1 (MQ=255)
                                  gACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAata                                                               >  2:3888008/1‑101 (MQ=255)
                                   aCATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAatat                                                              <  1:3887523/101‑1 (MQ=255)
                                   aCATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAatat                                                              <  1:3887756/101‑1 (MQ=255)
                                   aCATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAatat                                                              <  2:3887539/101‑1 (MQ=255)
                                   aCATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAatat                                                              <  2:3887706/101‑1 (MQ=255)
                                     aTTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTc                                                            >  2:3888011/1‑101 (MQ=255)
                                       tGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCgg                                                          <  1:3887451/101‑1 (MQ=255)
                                       tGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCgg                                                          <  1:3887702/101‑1 (MQ=255)
                                        gggCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGt                                                         >  1:3888014/1‑101 (MQ=255)
                                          gCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTAt                                                       <  1:3887364/101‑1 (MQ=255)
                                           cTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATc                                                      >  2:3888016/1‑101 (MQ=255)
                                             gTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAg                                                    <  2:3887497/101‑1 (MQ=255)
                                              tATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAgg                                                   >  1:3888018/1‑101 (MQ=255)
                                               aTTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt                                                  <  2:3887678/101‑1 (MQ=255)
                                               aTTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt                                                  <  1:3887408/101‑1 (MQ=255)
                                               aTTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGt                                                  <  2:3887477/101‑1 (MQ=255)
                                                ttGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTa                                                 <  1:3887292/101‑1 (MQ=255)
                                                  gCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAgc                                               >  1:3888022/1‑101 (MQ=255)
                                                    cACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCgg                                                          <  1:3887580/88‑1 (MQ=255)
                                                    cACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAgcgg                                             >  2:3888025/1‑101 (MQ=255)
                                                     aCGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAgcggc                                            >  1:3888029/1‑101 (MQ=255)
                                                      cGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAgcggcg                                           >  2:3888030/1‑101 (MQ=255)
                                                      cGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAgcggcg                                           <  2:3887674/101‑1 (MQ=255)
                                                       ggATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGcggcgg                                          <  2:3887508/101‑1 (MQ=255)
                                                       ggATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGcggcgg                                          <  1:3887653/101‑1 (MQ=255)
                                                       ggATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGcggcgg                                          <  2:3887624/101‑1 (MQ=255)
                                                        gATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAg                                                                          <  2:3887642/68‑1 (MQ=255)
                                                        gATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGt                                         <  1:3887862/101‑1 (MQ=255)
                                                         aTTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTa                                        >  1:3888034/1‑101 (MQ=255)
                                                          ttATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTaa                                       >  2:3888036/1‑101 (MQ=255)
                                                           tATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg                                      <  2:3887416/101‑1 (MQ=255)
                                                           tATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAg                                      <  2:3887614/101‑1 (MQ=255)
                                                            aTGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGc                                     >  2:3888040/1‑101 (MQ=255)
                                                            aTGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGc                                     <  1:3887589/101‑1 (MQ=255)
                                                             tGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGcc                                    >  1:3888044/1‑101 (MQ=255)
                                                              ggTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCa                                   >  2:3888045/1‑101 (MQ=255)
                                                                tAGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTa                                        <  2:3887577/94‑1 (MQ=255)
                                                                 aGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCt                                <  2:3887650/101‑1 (MQ=255)
                                                                 aGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCt                                <  2:3887519/101‑1 (MQ=255)
                                                                 aGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCt                                <  1:3887719/101‑1 (MQ=255)
                                                                 aGCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCt                                >  1:3888049/1‑101 (MQ=255)
                                                                  gCTCTCCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTa                               >  2:3888051/1‑101 (MQ=255)
                                                                      tcCATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTcc                           >  2:3888055/1‑101 (MQ=255)
                                                                       ccATCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCa                          <  1:3887610/101‑1 (MQ=255)
                                                                         aTCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACt                        >  1:3888059/1‑101 (MQ=255)
                                                                         aTCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACt                        <  2:3887668/101‑1 (MQ=255)
                                                                          tCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTc                       <  2:3887662/101‑1 (MQ=255)
                                                                          tCGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTc                       <  2:3887584/101‑1 (MQ=255)
                                                                           cGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCa                      >  1:3888062/1‑101 (MQ=255)
                                                                           cGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCa                      <  2:3887596/101‑1 (MQ=255)
                                                                           cGCCTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCa                      <  1:3887481/101‑1 (MQ=255)
                                                                              cTGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGca                   <  1:3887623/101‑1 (MQ=255)
                                                                               tGATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcac                  >  2:3888065/1‑101 (MQ=255)
                                                                                gATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca                 >  1:3888068/1‑101 (MQ=255)
                                                                                gATAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGcaca                 >  2:3888069/1‑101 (MQ=255)
                                                                                 aTAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCacac                <  2:3887366/101‑1 (MQ=255)
                                                                                  tAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACg               <  2:3887735/101‑1 (MQ=255)
                                                                                  tAGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACg               <  1:3887597/101‑1 (MQ=255)
                                                                                   aGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGc              >  1:3888072/1‑101 (MQ=255)
                                                                                   aGATCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGc              >  2:3888076/1‑101 (MQ=255)
                                                                                      tCACCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCacac                >  1:3888078/1‑96 (MQ=255)
                                                                                        aCCTGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTc         <  2:3887873/101‑1 (MQ=255)
                                                                                           tGGGCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCgg      >  2:3888083/1‑101 (MQ=255)
                                                                                            gggCCAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCggg     >  1:3888085/1‑101 (MQ=255)
                                                                                               ccAACTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCtc  <  2:3887958/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
TTCAATCAACAATGAATCATCCCCTTCCGGAGCAGACATTGGGCTGTATTGCCACGGATTATGGTAGCTCTCCATCGCCTGATAGATCACCTGGGCCAGCTCATTATTACTGGACGGATCATAGCACAGCAAATATTCGGTATCAGGTAGCGGCGGTAAGCCATCTACTCCACTCAGCACACGCAGGTCCGGGCTC  >  NC_000913/2405718‑2405913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A