Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F13 I1 R1	84	286.4	14512654	99.7%	14469116	98.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,626,182	T→C	H356H (CAT→CAC)	ppx →	exopolyphosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,626,182	0	T	C	100.0%	697.9 / NA	164	H356H (CAT→CAC)	ppx	exopolyphosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (41/123); total (41/123)

Only 100 of 164 total aligned reads displayed.

ACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATATTC  >  NC_000913/2626085‑2626279

aCCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCg                                                                                                <  2:4204618/101‑1 (MQ=255)

   aGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCaa                                                                                             <  1:4204346/101‑1 (MQ=255)

    gTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAAc                                                                                            <  2:4204762/101‑1 (MQ=255)

     tATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACt                                                                                           <  2:4204407/101‑1 (MQ=255)

      aTCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTg                                                                                          <  2:4204440/101‑1 (MQ=255)

       tCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCg                                                                                                <  1:4204494/94‑1 (MQ=255)

          caTCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAgg                                                                                      <  2:4204490/101‑1 (MQ=255)

          caTCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAgg                                                                                      <  2:4204796/101‑1 (MQ=255)

            tCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGgcg                                                                                    <  1:4204648/101‑1 (MQ=255)

               aCAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTa                                                                                 <  2:4204615/101‑1 (MQ=255)

                   cGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGc                                                                             <  1:4204525/101‑1 (MQ=255)

                   cGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGc                                                                             <  1:4204603/101‑1 (MQ=255)

                    gAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCg                                                                            <  2:4204644/101‑1 (MQ=255)

                      aCAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGAt                                                                          <  2:4204557/101‑1 (MQ=255)

                      aCAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGAt                                                                          <  1:4204623/101‑1 (MQ=255)

                      aCAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGAt                                                                          <  2:4204521/101‑1 (MQ=255)

                        aGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATgg                                                                        >  1:4204925/1‑101 (MQ=255)

                        aGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATgg                                                                        <  2:4204454/101‑1 (MQ=255)

                         ggCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATggg                                                                       <  2:4204484/101‑1 (MQ=255)

                         ggCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATggg                                                                       <  2:4204546/101‑1 (MQ=255)

                          gCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCt                                                                                  <  2:4204503/89‑1 (MQ=255)

                            ccGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGgccg                                                                    <  2:4204541/101‑1 (MQ=255)

                             cGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGgccgc                                                                   <  2:4204641/101‑1 (MQ=255)

                               aCGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCa                                                                 <  2:4204726/101‑1 (MQ=255)

                                    tGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCAtgctg                                                            <  1:4204539/101‑1 (MQ=255)

                                     gCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCAtgctgc                                                           <  2:4204626/101‑1 (MQ=255)

                                       tGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCCCCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCAt                                                         <  2:4204392/101‑1 (MQ=255)

                                       tGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCAt                                                         <  2:4204466/101‑1 (MQ=255)

                                       tGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCAt                                                         <  2:4204498/101‑1 (MQ=255)

                                        ggATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATg                                                        <  1:4204460/101‑1 (MQ=255)

                                         gATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGgcgc                                                                                   >  1:4204950/1‑73 (MQ=255)

                                         gATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGa                                                       <  1:4204716/101‑1 (MQ=255)

                                          aTACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGc                                                                                               >  1:4204953/1‑60 (MQ=255)

                                           tACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCCTGCTGCATGAgg                                                     >  1:4204954/1‑101 (MQ=255)

                                           tACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAgg                                                     <  1:4204756/101‑1 (MQ=255)

                                            aCCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGt                                                    <  2:4204850/101‑1 (MQ=255)

                                             ccACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTc                                                   >  1:4204958/1‑101 (MQ=255)

                                             ccACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTc                                                   <  2:4204636/101‑1 (MQ=255)

                                               aCTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCgg                                                 <  2:4204555/101‑1 (MQ=255)

                                                cTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCggg                                                <  1:4204758/101‑1 (MQ=255)

                                                  aTGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGtt                                              <  1:4204224/101‑1 (MQ=255)

                                                  aTGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGtt                                              <  2:4204530/101‑1 (MQ=255)

                                                  aTGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGtt                                              <  2:4204396/101‑1 (MQ=255)

                                                   tGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTg                                             <  2:4204688/101‑1 (MQ=255)

                                                      aaaTGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAat                                          <  2:4204657/101‑1 (MQ=255)

                                                      aaaTGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAat                                          <  1:4204577/101‑1 (MQ=255)

                                                       aaTGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAata                                         <  2:4204617/101‑1 (MQ=255)

                                                        aTGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAatat                                        <  2:4204559/101‑1 (MQ=255)

                                                           tACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCaa                                     <  1:4204675/101‑1 (MQ=255)

                                                           tACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCaa                                     <  1:4204695/101‑1 (MQ=255)

                                                              gAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACca                                  <  2:4204578/101‑1 (MQ=255)

                                                              gAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACca                                  <  2:4204549/101‑1 (MQ=255)

                                                                aCAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACcaca                                <  1:4204505/101‑1 (MQ=255)

                                                                aCAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACcaca                                <  2:4204584/101‑1 (MQ=255)

                                                                aCAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACcaca                                <  1:4204684/101‑1 (MQ=255)

                                                                 cAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAg                               <  2:4204706/101‑1 (MQ=255)

                                                                 cAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAg                               <  1:4204724/101‑1 (MQ=255)

                                                                 cAGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAg                               >  1:4204961/1‑101 (MQ=255)

                                                                  aGTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGc                              <  1:4204594/101‑1 (MQ=255)

                                                                   gTGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCg                             <  1:4204741/101‑1 (MQ=255)

                                                                    tGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCgg                            >  2:4204963/1‑101 (MQ=255)

                                                                    tGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCgg                            <  2:4204732/101‑1 (MQ=255)

                                                                    tGGCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCgg                            <  1:4204733/101‑1 (MQ=255)

                                                                     ggCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGt                           >  1:4204964/1‑101 (MQ=255)

                                                                      gCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGtt                          <  1:4204561/101‑1 (MQ=255)

                                                                      gCGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGtt                          <  1:4204697/101‑1 (MQ=255)

                                                                       cGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGttt                         <  1:4204526/101‑1 (MQ=255)

                                                                       cGGGAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGttt                         >  1:4204967/1‑101 (MQ=255)

                                                                        gggAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGt                                                    <  2:4204248/73‑1 (MQ=255)

                                                                        gggAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTg                        >  1:4204968/1‑101 (MQ=255)

                                                                          gAACAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCa                      >  2:4204969/1‑101 (MQ=255)

                                                                           aaCAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGttt                         <  1:4204609/97‑1 (MQ=255)

                                                                           aaCAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCAt                     >  1:4204971/1‑101 (MQ=255)

                                                                            aCAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATc                    <  1:4204435/101‑1 (MQ=255)

                                                                             cAGCAACCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCg                   >  1:4204973/1‑101 (MQ=255)

                                                                                 aaCCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCAc               <  2:4204535/101‑1 (MQ=255)

                                                                                 aaCCGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCAc               >  1:4204974/1‑101 (MQ=255)

                                                                                    cGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCgg                            >  1:4204976/1‑85 (MQ=255)

                                                                                    cGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTcc            <  1:4204532/101‑1 (MQ=255)

                                                                                    cGAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTcc            <  2:4204651/101‑1 (MQ=255)

                                                                                     gAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCAtg                                                               <  1:4204628/49‑1 (MQ=255)

                                                                                     gAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCg           <  2:4204835/101‑1 (MQ=255)

                                                                                     gAAGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCg           <  2:4204587/101‑1 (MQ=255)

                                                                                      aaGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGc          >  1:4204978/1‑101 (MQ=255)

                                                                                      aaGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGc          >  1:4204979/1‑101 (MQ=255)

                                                                                      aaGCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGc          >  2:4204980/1‑101 (MQ=255)

                                                                                        gCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCtt        <  1:4204604/101‑1 (MQ=255)

                                                                                        gCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCtt        <  1:4204744/101‑1 (MQ=255)

                                                                                        gCTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCtt        >  1:4204983/1‑101 (MQ=255)

                                                                                         cTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGc                  >  2:4204986/1‑90 (MQ=255)

                                                                                         cTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTta       <  2:4204566/101‑1 (MQ=255)

                                                                                         cTGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTta       >  1:4204985/1‑101 (MQ=255)

                                                                                          tGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTtat      <  2:4204572/101‑1 (MQ=255)

                                                                                          tGGCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTtat      <  1:4204487/101‑1 (MQ=255)

                                                                                           ggCGCACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTtata     <  1:4204579/101‑1 (MQ=255)

                                                                                            gcgcACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTatat    >  1:4204987/1‑101 (MQ=255)

                                                                                             cgcACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATAtt   >  1:4204990/1‑101 (MQ=255)

                                                                                             cgcACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATAtt   >  1:4204989/1‑101 (MQ=255)

                                                                                             cgcACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATAtt   <  1:4204677/101‑1 (MQ=255)

                                                                                             cgcACCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATAtt   <  1:4204477/101‑1 (MQ=255)

ACCAGTATCACATCGACAGCGAACAGGCCCGACGGGTGCTGGATACCACTATGCAAATGTACGAACAGTGGCGGGAACAGCAACCGAAGCTGGCGCATCCGCAACTGGAGGCGCTACTGCGATGGGCCGCCATGCTGCATGAGGTCGGGTTGAATATCAACCACAGCGGTTTGCATCGCCACTCCGCTTATATTC  >  NC_000913/2626085‑2626279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A