Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F13 I1 R1
|
84 |
286.4 |
14512654 |
99.7% |
14469116 |
98.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,729,487 |
G→A |
intergenic (‑43/+129) |
gltW ← / ← rrsG |
tRNA‑Glu/16S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,729,487 | 0 | G | A | 100.0%
| 258.1
/ NA
| 80 | intergenic (‑43/+129) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (35/45); total (35/45) |
ACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTG > NC_000913/2729461‑2729584
|
aCGCGTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa < 2:4349912/101‑1 (MQ=11)
aCGCGTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa < 1:4350025/101‑1 (MQ=11)
aCGCGTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa < 2:4350124/101‑1 (MQ=11)
aCGCGTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa < 1:4350230/101‑1 (MQ=11)
gcgTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt > 1:4350556/1‑101 (MQ=17)
gcgTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt < 1:4350033/101‑1 (MQ=17)
gcgTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt > 1:4350555/1‑101 (MQ=17)
gcgTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt > 1:4350554/1‑101 (MQ=17)
cgTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc > 2:4350557/1‑101 (MQ=17)
gTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa > 1:4350558/1‑101 (MQ=17)
gTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa > 2:4350560/1‑101 (MQ=17)
gTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 1:4350265/101‑1 (MQ=17)
gTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa > 2:4350559/1‑101 (MQ=17)
gTTGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa < 2:4350049/101‑1 (MQ=17)
ttGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc > 1:4350561/1‑101 (MQ=17)
ttGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc < 2:4350051/101‑1 (MQ=17)
tGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt > 1:4350563/1‑101 (MQ=17)
tGCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt > 2:4350562/1‑101 (MQ=17)
gCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt > 2:4350564/1‑101 (MQ=17)
gCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt < 2:4350136/101‑1 (MQ=17)
gCGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtt < 1:4350043/101‑1 (MQ=17)
cGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTATACGCCTTGCTATTCACttt > 2:4350566/1‑101 (MQ=12)
cGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt < 2:4350066/101‑1 (MQ=17)
cGTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACttt > 2:4350565/1‑101 (MQ=17)
gTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 2:4350568/1‑101 (MQ=18)
gTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 1:4350054/101‑1 (MQ=18)
gTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 1:4350281/101‑1 (MQ=18)
gTGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 1:4350567/1‑101 (MQ=18)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 1:4350570/1‑101 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 2:4350208/101‑1 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:4350233/101‑1 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:4350191/101‑1 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:4350185/101‑1 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 2:4350569/1‑101 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 2:4350571/1‑101 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 2:4350572/1‑101 (MQ=25)
tGATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 2:4350195/101‑1 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca > 1:4350574/1‑101 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca > 1:4350576/1‑101 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 2:4350100/101‑1 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca > 2:4350573/1‑101 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca > 2:4350575/1‑101 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 1:4350015/101‑1 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 2:4350016/101‑1 (MQ=25)
gATATTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 2:4350013/101‑1 (MQ=25)
atatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt < 2:4350232/98‑1 (MQ=21)
atatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat > 1:4350579/1‑101 (MQ=255)
atatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat > 1:4350578/1‑101 (MQ=38)
atatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat > 1:4350577/1‑101 (MQ=38)
atatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat < 1:4350439/101‑1 (MQ=38)
atatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcat < 1:4350197/101‑1 (MQ=38)
tatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc > 1:4350581/1‑101 (MQ=255)
tatTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc > 2:4350580/1‑101 (MQ=255)
atTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca > 1:4350582/1‑101 (MQ=255)
atTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca < 1:4350170/101‑1 (MQ=255)
atTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca < 1:4350089/101‑1 (MQ=255)
atTTTCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca > 2:4350583/1‑101 (MQ=255)
ttttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAg < 2:4349981/101‑1 (MQ=255)
ttttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAg < 1:4350446/101‑1 (MQ=255)
tttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGa < 1:4349992/101‑1 (MQ=255)
ttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACTGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc < 2:4350105/101‑1 (MQ=255)
ttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 1:4350065/94‑1 (MQ=25)
ttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc < 2:4350201/101‑1 (MQ=255)
ttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc > 1:4350584/1‑101 (MQ=255)
ttCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc < 1:4350164/101‑1 (MQ=255)
tCGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACa < 1:4349881/101‑1 (MQ=255)
cGTGTAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACaa < 2:4350367/101‑1 (MQ=255)
tgtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATc > 2:4350585/1‑101 (MQ=255)
tgtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATc < 1:4350103/101‑1 (MQ=255)
tgtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATc < 2:4350095/101‑1 (MQ=255)
gtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt < 1:4350177/101‑1 (MQ=255)
gtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt < 1:4350110/101‑1 (MQ=255)
gtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt < 1:4350107/101‑1 (MQ=255)
gtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt < 2:4350132/101‑1 (MQ=255)
gtAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCt < 1:4350021/101‑1 (MQ=255)
tAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg > 2:4350586/1‑101 (MQ=255)
tAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg > 2:4350587/1‑101 (MQ=255)
tAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg < 1:4350113/101‑1 (MQ=255)
tAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg > 1:4350588/1‑101 (MQ=255)
tAGAGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg < 2:4350508/101‑1 (MQ=255)
|
ACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTG > NC_000913/2729461‑2729584
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
