Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F13 I1 R1	84	286.4	14512654	99.7%	14469116	98.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,880,042	A→G	L116L (TTA→CTA)	casE ←	pre‑CRISPR RNA endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,880,042	0	A	G	99.7%	1395.1 / ‑4.5	327	L116L (TTA→CTA)	casE	pre‑CRISPR RNA endonuclease
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (162/163); total (164/163)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01

Only 100 of 327 total aligned reads displayed.

ATACTGTGGCCGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAACGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATAGAGT  >  NC_000913/2879944‑2880139

    tgtgGCCGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAAc                                                                                             >  1:4571383/1‑101 (MQ=255)

      tgGCCGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAAccc                                                                                           >  1:4571386/1‑101 (MQ=255)

      tgGCCGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAAccc                                                                                           >  2:4571388/1‑101 (MQ=255)

       ggCCGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCg                                                                                          >  1:4571390/1‑101 (MQ=255)

          cGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACa                                                                                       >  2:4571395/1‑101 (MQ=255)

            ttCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGc                                                                                     >  1:4571399/1‑101 (MQ=255)

            ttCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGc                                                                                     <  1:4570832/101‑1 (MQ=255)

            ttCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGc                                                                                     <  2:4570994/101‑1 (MQ=255)

            ttCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGc                                                                                     <  1:4571040/101‑1 (MQ=255)

            ttCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGc                                                                                     >  2:4571398/1‑101 (MQ=255)

             tCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCg                                                                                    <  1:4570976/101‑1 (MQ=255)

                gATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGttt                                                                                 <  2:4571071/101‑1 (MQ=255)

                gATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGttt                                                                                 <  1:4571015/101‑1 (MQ=255)

                gATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGttt                                                                                 >  2:4571404/1‑101 (MQ=255)

                gATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGttt                                                                                 <  2:4570891/101‑1 (MQ=255)

                 atatGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTa                                                                                >  2:4571408/1‑101 (MQ=255)

                 atatGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTa                                                                                <  2:4571086/101‑1 (MQ=255)

                  tatGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTaa                                                                               >  1:4571412/1‑101 (MQ=255)

                   atGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAat                                                                              >  2:4571415/1‑101 (MQ=255)

                   atGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAat                                                                              >  1:4571417/1‑101 (MQ=255)

                     gggATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAatat                                                                            <  2:4571137/101‑1 (MQ=255)

                      ggATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATAtt                                                                           <  1:4570920/101‑1 (MQ=255)

                        aTGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTcc                                                                         >  2:4571420/1‑101 (MQ=255)

                          gCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCt                                                                       <  2:4570962/101‑1 (MQ=255)

                           cacaTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCtt                                                                      <  1:4570988/101‑1 (MQ=255)

                           cacaTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCtt                                                                      <  1:4570889/101‑1 (MQ=255)

                           cacaTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCtt                                                                      <  1:4570965/101‑1 (MQ=255)

                            acaTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCttt                                                                     <  2:4570913/101‑1 (MQ=255)

                            acaTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCttt                                                                     >  1:4571425/1‑101 (MQ=255)

                             caTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGc                                                                                     <  2:4571018/84‑1 (MQ=255)

                             caTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTa                                                                    <  1:4570844/101‑1 (MQ=255)

                              aTCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTAc                                                                   <  1:4571094/101‑1 (MQ=255)

                               tCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCtt                                                                      <  2:4571185/97‑1 (MQ=255)

                                cTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTg                                                                 <  1:4571077/101‑1 (MQ=255)

                                cTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTg                                                                 >  1:4571428/1‑101 (MQ=255)

                                 ttCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGt                                                                <  1:4571242/101‑1 (MQ=255)

                                  tCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTc                                                               <  2:4570878/101‑1 (MQ=255)

                                  tCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTc                                                               <  2:4571098/101‑1 (MQ=255)

                                   cAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTcc                                                              >  2:4571431/1‑101 (MQ=255)

                                   cAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTcc                                                              <  1:4570585/101‑1 (MQ=255)

                                    aaCGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTTCa                                                             >  2:4571434/1‑101 (MQ=255)

                                    aaCGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCa                                                             <  2:4571151/101‑1 (MQ=255)

                                     aCGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAg                                                            <  2:4570944/101‑1 (MQ=255)

                                      cgcgcgCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAgg                                                           >  2:4571438/1‑101 (MQ=255)

                                      cgcgcgCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAgg                                                           <  1:4570806/101‑1 (MQ=255)

                                       gcgcgcCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGgc                                                          <  2:4570973/101‑1 (MQ=255)

                                       gcgcgcCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGgc                                                          >  1:4571440/1‑101 (MQ=255)

                                        cgcgcCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCg                                                                                                 >  2:4571443/1‑61 (MQ=255)

                                           gccgcATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCa                                                             >  1:4571449/1‑94 (MQ=255)

                                           gccgcATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCtt                                                      >  2:4571448/1‑101 (MQ=255)

                                            ccgcATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCttt                                                     <  2:4571307/101‑1 (MQ=255)

                                             cgcATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCtttt                                                    >  1:4571454/1‑101 (MQ=255)

                                             cgcATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCtttt                                                    >  2:4571455/1‑101 (MQ=255)

                                              gcATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTg                                                   >  1:4571460/1‑101 (MQ=255)

                                               cATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACt                                                                  <  2:4570866/85‑1 (MQ=255)

                                               cATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGgc                                                          <  2:4570759/93‑1 (MQ=255)

                                                aTTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGAt                                                 <  2:4571062/101‑1 (MQ=255)

                                                aTTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGAt                                                 >  2:4571463/1‑101 (MQ=255)

                                                 ttGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTa                                                                    <  2:4570816/81‑1 (MQ=255)

                                                   gCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGt                                              <  2:4571046/101‑1 (MQ=255)

                                                    cccAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTc                                             >  1:4571468/1‑101 (MQ=255)

                                                    cccAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTc                                             <  2:4571052/101‑1 (MQ=255)

                                                     ccAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCg                                            >  2:4571470/1‑101 (MQ=255)

                                                        aTTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCgaga                                         <  2:4571024/101‑1 (MQ=255)

                                                         tttACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGaa                                        >  1:4571475/1‑101 (MQ=255)

                                                           tACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATa                                      >  2:4571478/1‑101 (MQ=255)

                                                             cGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGt                                    <  1:4571292/101‑1 (MQ=255)

                                                              gTTGCAACCGCGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATa                                      >  1:4571481/1‑98 (MQ=255)

                                                              gTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGtt                                   <  1:4571001/101‑1 (MQ=255)

                                                               ttGCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGttt                                  >  2:4571482/1‑101 (MQ=255)

                                                                 gCAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTg                                <  1:4571025/101‑1 (MQ=255)

                                                                  cAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGa                               <  2:4571113/101‑1 (MQ=255)

                                                                  cAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGa                               <  1:4571259/101‑1 (MQ=255)

                                                                  cAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGa                               >  1:4571487/1‑101 (MQ=255)

                                                                  cAACCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGa                               <  1:4570813/101‑1 (MQ=255)

                                                                   aaCCACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGAt                              >  2:4571489/1‑101 (MQ=255)

                                                                      cACGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCgg                           >  1:4571494/1‑101 (MQ=255)

                                                                       aCGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGa                          >  2:4571499/1‑101 (MQ=255)

                                                                       aCGCGATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGa                          >  1:4571498/1‑101 (MQ=255)

                                                                        cgcgATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGAt                         <  1:4571126/101‑1 (MQ=255)

                                                                         gcgATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATc                             <  1:4570996/96‑1 (MQ=255)

                                                                           gATTTGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTg                      >  2:4571502/1‑101 (MQ=255)

                                                                             tttGTTCTGCTTCTTTTATTAGCGGACCCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCg                                            <  1:4570956/77‑1 (MQ=255)

                                                                              ttGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGccc                   >  1:4571507/1‑101 (MQ=255)

                                                                               tGTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCg                  <  1:4570781/101‑1 (MQ=255)

                                                                                gTTCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGa                 >  2:4571510/1‑101 (MQ=255)

                                                                                 ttCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGaa                >  1:4571513/1‑101 (MQ=255)

                                                                                  tCTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAg               >  2:4571515/1‑101 (MQ=255)

                                                                                   cTGCTTCTTTTATTAGCGGAACCCGACAGCGTTTAATATTCCCtt                                                                      <  2:4570923/45‑1 (MQ=255)

                                                                                      cttcttTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGa           >  2:4571521/1‑101 (MQ=255)

                                                                                        tcttTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGaaa         >  1:4571525/1‑101 (MQ=255)

                                                                                        tcttTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGaaa         <  1:4571043/101‑1 (MQ=255)

                                                                                        tcttTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGaaa         >  2:4571524/1‑101 (MQ=255)

                                                                                         cttTTATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGaaaa        >  1:4571528/1‑101 (MQ=255)

                                                                                          ttttATTAGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAAt       <  1:4571064/101‑1 (MQ=255)

                                                                                            ttattaGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATag     >  1:4571531/1‑101 (MQ=255)

                                                                                             tattaGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATaga    >  2:4571537/1‑101 (MQ=255)

                                                                                               ttaGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATAGAGt  <  2:4571228/101‑1 (MQ=255)

                                                                                               ttaGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATAGAGt  >  1:4571541/1‑101 (MQ=255)

                                                                                               ttaGCGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATAGAGt  <  1:4570880/101‑1 (MQ=255)

ATACTGTGGCCGTTCCGATATGGGATGCACATCTTCAACGCGCGCCGCATTGCCCAATTTACGTTGCAACCACGCGATTTGTTCTGCTTCTTTTATTAACGGAACCCGACAGCGTTTAATATTCCCTTTACTGTCCAGGCGCTTTTGATTGTCGAGAATAGTTTTGATCGGATTTGCCCGAAGCCGAAAATAGAGT  >  NC_000913/2879944‑2880139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A