Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F66 I1 R1 35 99.0 4347662 95.6% 4156364 127.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA BS168_reference_genome 2,271,523 A→C D45E (GAT→GAG)  uvrX ← lesion bypass phage DNA polymerase; phage SPbeta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BS168_reference_genome2,271,5230AC100.0% 311.9 / NA 91D45E (GAT→GAG) uvrXlesion bypass phage DNA polymerase; phage SPbeta
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (40/51);  total (40/51)

AAAAGCTTCATTTGTGGATTTACAATGTGTATTCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAACACTACACTTCCCTGTCTATCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAATCAATCA  >  BS168_reference_genome/2271392‑2271656
                                                                                                                                   |                                                                                                                                     
aaaaGCTTCTTTTGTGGATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTa                                                                                                                                 <  1:203771/138‑1 (MQ=255)
aaaaGCTTCATTTGTGGATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTa                                                                                                                                 <  2:55316/138‑1 (MQ=12)
aaaaGCTTCATTTGTGGATTTAAAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACAACACTTCCCTGTCTCTCCGTAt                                                                                                                                <  5:76285/139‑1 (MQ=11)
     cTTCATTTGTGTATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCATGTCTCTCCGTATTccc                                                                                                                            >  8:286819/1‑138 (MQ=11)
        cATTTGTGGATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGAGCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTac                                                                                                                         <  6:508844/138‑1 (MQ=255)
        cATTTGGGGATTTACTATGTGTACCCTTGGAGCTTCTGGTAGCTCAAATAGTCTCGATCCGGTTTTGATTCCAAAATCTTTTTTCAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTac                                                                                                                         <  1:212852/138‑1 (MQ=11)
             gtgGATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTATTACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    <  7:376971/138‑1 (MQ=255)
             gtgGATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    <  4:189672/138‑1 (MQ=255)
             gtgGATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGGCTCGATCGTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    <  8:526187/138‑1 (MQ=11)
                gATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCCGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTa                                                                                                                                 <  2:245733/122‑1 (MQ=255)
                gATTTACAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTa                                                                                                                                 >  1:245733/1‑122 (MQ=12)
                      cAATGTGTATCCTTGGATCTTCTGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           <  1:33950/138‑1 (MQ=255)
                      cAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           <  4:364524/138‑1 (MQ=255)
                      cAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           <  8:537003/138‑1 (MQ=255)
                      cAATGTGTATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           <  1:234292/138‑1 (MQ=255)
                          gtgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGt                                                                                                       >  3:249507/1‑138 (MQ=255)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCTATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGtt                                                                                                      >  1:420737/1‑138 (MQ=255)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTacaa                                                                                                                       >  5:440033/1‑121 (MQ=9)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTacaa                                                                                                                       <  6:440033/121‑1 (MQ=9)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    >  7:61517/1‑124 (MQ=255)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    <  8:61517/124‑1 (MQ=255)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGtt                                                                                                      >  2:528287/1‑138 (MQ=255)
                           tgtATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTa                                                                                                     <  8:6417/139‑1 (MQ=255)
                             tATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTaaa                                                                                                   <  6:246147/139‑1 (MQ=255)
                             tATCCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTaa                                                                                                    <  1:329373/138‑1 (MQ=255)
                              atccTTGTATCTTCAGGTATCTCAAATAGTCTAGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTaaa                                                                                                   <  4:299614/135‑1 (MQ=11)
                                   tGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    <  8:111948/116‑1 (MQ=9)
                                   tGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAg                                                                                                                    >  7:111948/1‑116 (MQ=9)
                                   tGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           >  8:338534/1‑125 (MQ=21)
                                   tGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           <  7:338534/125‑1 (MQ=21)
                                     gATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCGTGTATCTCCGTATTCCCTCCAACAGCAAGATAGCATGTTAAAGGGTTAAg                                                                                           >  7:62792/1‑139 (MQ=11)
                                     gATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTa                                                                                                     <  8:245856/129‑1 (MQ=25)
                                     gATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTa                                                                                                     >  7:245856/1‑129 (MQ=25)
                                     gATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGtt                                                                                              >  4:515030/1‑136 (MQ=255)
                                     gATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGtt                                                                                              <  3:515030/136‑1 (MQ=255)
                                     gATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAg                                                                                           <  5:131737/139‑1 (MQ=255)
                                     gATCTTCAGGAATCTCAAAAAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTAAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAg                                                                                           <  6:343648/139‑1 (MQ=11)
                                      aTCTTCAGGTATCTCCAATAGTCACGAACCTCTTATGAAACCAAAAGCTTTTTTAAGTGAAGGAGATCCAGCTAATCCTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGc                                                                                          <  2:362893/139‑1 (MQ=255)
                                       tCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           <  7:368251/121‑1 (MQ=21)
                                       tCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGc                                                                                                           >  8:368251/1‑121 (MQ=21)
                                                aTCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTa                                                                                >  1:425589/1‑139 (MQ=255)
                                                 tctcAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTa                                                                                >  1:475868/1‑138 (MQ=255)
                                                    cAACTAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            <  8:190913/139‑1 (MQ=255)
                                                     aaaTAGTCTCGATCCTGTTTTGATTCCTAAATCTTTTTAAAGTGCAGTCGATGCAGCTATTACTACACTTCCCTGTCTCTACGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACa                                                                              <  2:425589/136‑1 (MQ=14)
                                                     aaaTAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            <  7:109096/138‑1 (MQ=255)
                                                           tctcGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATa                                                                       >  6:190194/1‑137 (MQ=255)
                                                            ctcGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATa                                                                       >  7:75722/1‑136 (MQ=255)
                                                              cGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGaa                                                                  <  1:528287/139‑1 (MQ=255)
                                                               gATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGa                                                                   <  5:200846/137‑1 (MQ=255)
                                                               gATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGa                                                                   <  8:226489/137‑1 (MQ=255)
                                                               gATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGa                                                                   <  5:264169/137‑1 (MQ=255)
                                                               gATCATTTTTTGATACCAAAATCTTTTTTAAGTGCACGATCTGCATCTAATACAACACTTCCATGTCTCTCCGTCTTCCCTACAACATCACGATATAATTTTAAAGGCTTAAGCCCCATTGTTACAGCCGATACAGa                                                                   <  8:145736/137‑1 (MQ=2)
                                                                    tGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCa                                                                                      >  8:403772/1‑113 (MQ=255)
                                                                    tGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCa                                                                                      <  7:403772/113‑1 (MQ=255)
                                                                             tCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGAttt                                                    >  1:369031/1‑138 (MQ=255)
                                                                             tCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGAtat                                                    >  1:177881/1‑136 (MQ=255)
                                                                                        ttttAAGTGCAGGCGATCCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGaca                                          <  3:322604/137‑1 (MQ=255)
                                                                                        ttttAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGaca                                          <  4:249507/137‑1 (MQ=255)
                                                                                         tttAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGAcaca                                        <  8:75722/138‑1 (MQ=255)
                                                                                         tttAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGAcaca                                        <  2:420737/138‑1 (MQ=255)
                                                                                         tttAAGTGCAGGAGATGCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGAcaca                                        <  2:475868/138‑1 (MQ=255)
                                                                                                         gCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGaca                                          <  1:512402/120‑1 (MQ=255)
                                                                                                         gCAGCTAATACTACACTTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGaca                                          >  2:512402/1‑120 (MQ=255)
                                                                                                               aatactacactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGt                                    <  7:216730/117‑1 (MQ=255)
                                                                                                               aatactacactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGt                                    >  8:216730/4‑120 (MQ=255)
                                                                                                                 tactacactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTAAAAGGGTTAAGCACCATTGATACAGCCGATAAAGAATAATAAAAGGATTTCATATCTACAAAAAGAATATTCTTACTTGGAAATtgt               >  5:399721/2‑139 (MQ=14)
                                                                                                                     acactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCTTAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGATATTGTGAg            >  2:295577/1‑138 (MQ=255)
                                                                                                                      cactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGt           >  2:276927/1‑138 (MQ=255)
                                                                                                                      cactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGt           >  8:82922/1‑138 (MQ=255)
                                                                                                                      cactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTa          <  7:394996/139‑1 (MQ=255)
                                                                                                                      cactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTa          <  5:467439/139‑1 (MQ=255)
                                                                                                                      cactTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGATACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGt           >  8:465872/1‑138 (MQ=255)
                                                                                                                       actTCGCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            >  5:511148/1‑72 (MQ=255)
                                                                                                                       actTCCCTGTCTCTCCGTATTCCCTACTACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGAcaca                                        <  1:465161/108‑1 (MQ=255)
                                                                                                                       actTCCCTGTCTCTCCGTATTCCCTACTACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGAcaca                                        >  2:465161/1‑108 (MQ=255)
                                                                                                                       actTCCCTGTCTCTCCGTATTCCCTACAACAGCAATATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTa          >  3:368227/1‑138 (MQ=255)
                                                                                                                       actTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            <  6:511148/72‑1 (MQ=255)
                                                                                                                       actTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTaa         >  3:9348/1‑139 (MQ=255)
                                                                                                                       actTCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGGTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTa          <  4:368227/138‑1 (MQ=255)
                                                                                                                       actTCCCTGGGTCTCCGTATTCCCTACACCAGCAAGATAGCATGTTAAAGGGTTGCGGCCGAGGGTTGCGGCCGAGGCAGAAGCAGAGGAGGATGTCATATCGCGACTAGGTGTATTCTTAGGTGGATATGGTGAGTag         >  4:357525/1‑138 (MQ=255)
                                                                                                                          tCCCTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTaatc       >  7:507675/1‑138 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            >  4:42967/1‑68 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            <  3:42967/68‑1 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATaaaa                                                          <  6:218493/86‑1 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATaaaa                                                          >  5:218493/1‑86 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGt                                    >  4:50931/1‑108 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGt                                    <  3:50931/108‑1 (MQ=255)
                                                                                                                           cccTGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTaatcaa     >  7:392212/1‑139 (MQ=255)
                                                                                                                              tGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAatcaatca  >  6:443287/1‑139 (MQ=255)
                                                                                                                              tGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAatcaatca  >  5:457047/1‑139 (MQ=255)
                                                                                                                              tGTCTCTCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAatcaatca  >  5:397621/1‑139 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            <  2:482191/63‑1 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            <  2:489310/63‑1 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            >  1:489310/1‑63 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGc                                                                            >  1:482191/1‑63 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTaatcaa     >  4:42179/1‑134 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTaatcaa     <  3:42179/134‑1 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAatcaatca  <  8:507675/137‑1 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAatcaatca  <  1:276927/137‑1 (MQ=255)
                                                                                                                                tctctcCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATATCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAatcaatca  <  2:177881/137‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                     
AAAAGCTTCATTTGTGGATTTACAATGTGTATTCTTGGATCTTCAGGTATCTCAAATAGTCTCGATCCTGTTTTGATTCCAAAATCTTTTTTAAGTGCAGGAGATGCAGCTAACACTACACTTCCCTGTCTATCCGTATTCCCTACAACAGCAAGATAGCATGTTAAAGGGTTAAGCCCCATTGTTACAGCCGATACAGAAGCATAAAAGGATTTCATATCGACACAAAGTATATTCTTACGTGGAAATTGTGAGTAATCAATCA  >  BS168_reference_genome/2271392‑2271656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A