Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F67 I1 R1 7 92.6 3278966 98.4% 3226502 134.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 4,566,519 C→T pseudogene (2784/2937 nt) yjiV → pseudogene; conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,566,5190CT100.0% 337.0 / NA 85pseudogene (2784/2937 nt)yjiVpseudogene; conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/46);  total (39/46)

GCTGCGCTGGGCAGGCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGCTGGTGG  >  CP009273/4566382‑4566655
                                                                                                                                         |                                                                                                                                        
gctgcGCTGGGCAGGCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGAGATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTAt                                                                                                                                        <  2:707357/140‑1 (MQ=255)
 ctgcGCTGGGCAGGCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATc                                                                                                                                       >  1:578282/1‑140 (MQ=255)
         ggCAGGCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTc                                                                                                                               <  2:427109/140‑1 (MQ=255)
              gCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTGCTGGCGTATCAACTTTTCATCGc                                                                                                                          <  2:1427603/140‑1 (MQ=255)
              gCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGc                                                                                                                          <  2:1427528/140‑1 (MQ=255)
              gCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGc                                                                                                                          <  1:255495/140‑1 (MQ=255)
              gCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGc                                                                                                                          >  2:1457411/1‑140 (MQ=255)
                cGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCaa                                                                                                                        <  2:578282/140‑1 (MQ=255)
                cGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCaa                                                                                                                        <  1:1466943/140‑1 (MQ=255)
                   tAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATgg                                                                                                                     >  2:1297111/1‑140 (MQ=255)
                   tAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATgg                                                                                                                     >  1:1442089/1‑140 (MQ=255)
                   tAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCGTCGATCAGGGGATGGGCTCCTGGCGTATCAACTTTTCATCGCAATgg                                                                                                                     >  1:75473/1‑140 (MQ=255)
                     gAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCa                                                                                                                   <  1:1081647/140‑1 (MQ=255)
                     gAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCa                                                                                                                   <  1:270175/140‑1 (MQ=255)
                          gACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACt                                                                                                              <  1:237690/140‑1 (MQ=255)
                           aCGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACtt                                                                                                             >  2:435706/1‑140 (MQ=255)
                           aCGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACtt                                                                                                             >  2:1006919/1‑140 (MQ=255)
                           aCGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACtt                                                                                                             >  1:529379/1‑140 (MQ=255)
                                 ttCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGAttt                                                                                                       <  1:430586/140‑1 (MQ=255)
                                 ttCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGAttt                                                                                                       <  1:468673/140‑1 (MQ=255)
                                 ttCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGAttt                                                                                                       <  1:430119/140‑1 (MQ=255)
                                                     cccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTcc                                                                                   >  2:871539/1‑140 (MQ=255)
                                                       cTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAg                                                                                 <  1:1153078/140‑1 (MQ=255)
                                                       cTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAg                                                                                 <  1:1327607/140‑1 (MQ=255)
                                                          aCCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTa                                                                              >  2:135162/1‑140 (MQ=255)
                                                          aCCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTa                                                                              >  2:780262/1‑140 (MQ=255)
                                                            cATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGt                                                                            >  2:226680/1‑140 (MQ=255)
                                                            cATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGt                                                                            >  2:1014198/1‑140 (MQ=255)
                                                            cATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGt                                                                            >  2:985292/1‑140 (MQ=255)
                                                               cGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaa                                                                         >  2:15166/1‑140 (MQ=255)
                                                               cGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaa                                                                         >  2:833001/1‑140 (MQ=255)
                                                               cGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaa                                                                         >  2:683843/1‑140 (MQ=255)
                                                                 gaaaCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaaa                                                                       <  2:69340/139‑1 (MQ=255)
                                                                      tGACGTTGTCTTTTGAGGATGGTCAGGTATTGAAGATCCTCTTCGATCAGGGGATGGGCTACTGTCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTGCCAGTTAGTCAAAATGGCt                                                                  <  2:1442089/140‑1 (MQ=255)
                                                                      tGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCt                                                                  <  1:1014198/140‑1 (MQ=255)
                                                                      tGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCt                                                                  <  1:985292/140‑1 (MQ=255)
                                                                      tGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCt                                                                  <  1:221431/140‑1 (MQ=255)
                                                                      tGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCt                                                                  <  2:529379/140‑1 (MQ=255)
                                                                       gACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTc                                                                 <  2:1308770/140‑1 (MQ=255)
                                                                        aCGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCa                                                                >  2:1587539/1‑140 (MQ=255)
                                                                        aCGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCa                                                                >  2:38840/1‑140 (MQ=255)
                                                                        aCGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCa                                                                >  2:1284889/1‑140 (MQ=255)
                                                                        aCGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCa                                                                >  2:735557/1‑140 (MQ=255)
                                                                                ttttGAGGATGGTCAGGTATTGAAGATCCGCTTCGATGAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa                                                        <  2:1326340/140‑1 (MQ=255)
                                                                                ttttGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa                                                        <  1:899404/140‑1 (MQ=255)
                                                                                ttgtGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa                                                        <  2:1326562/137‑1 (MQ=255)
                                                                                      ggATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaaggaag                                                  >  1:557348/1‑140 (MQ=255)
                                                                                         tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGa                                               <  2:1404746/140‑1 (MQ=255)
                                                                                          ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa                                                        <  2:731057/130‑1 (MQ=255)
                                                                                          ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa                                                        >  1:731057/1‑130 (MQ=255)
                                                                                          ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGaa                                              >  1:1594842/1‑140 (MQ=255)
                                                                                          ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGaa                                              >  2:502296/1‑140 (MQ=255)
                                                                                          ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCAGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGaa                                              >  2:588825/1‑140 (MQ=255)
                                                                                                      aaGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaaa                                                                       >  2:973328/1‑103 (MQ=255)
                                                                                                      aaGATCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaaa                                                                       <  1:973328/103‑1 (MQ=255)
                                                                                                          tCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTg                                                          <  1:1308281/112‑1 (MQ=255)
                                                                                                          tCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTg                                                          >  2:1308281/1‑112 (MQ=255)
                                                                                                          tCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGaa                              <  1:935075/140‑1 (MQ=255)
                                                                                                          tCCGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGaa                              >  2:199413/1‑140 (MQ=255)
                                                                                                           ccGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAag                             >  1:764626/1‑140 (MQ=255)
                                                                                                           ccGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAag                             >  2:1258440/1‑140 (MQ=255)
                                                                                                            cGCTTCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCACAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAaga                            <  1:1602670/140‑1 (MQ=255)
                                                                                                                tCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGt                        <  2:561657/140‑1 (MQ=255)
                                                                                                                tCGATCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGt                        <  2:1435574/140‑1 (MQ=255)
                                                                                                                   aTCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTgg                     >  1:875866/1‑140 (MQ=255)
                                                                                                                   aTCAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTgg                     >  1:694257/1‑140 (MQ=255)
                                                                                                                     cAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGc                   <  2:873173/140‑1 (MQ=255)
                                                                                                                     cAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGc                   <  2:1529209/140‑1 (MQ=255)
                                                                                                                     cAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGc                   <  1:735557/140‑1 (MQ=255)
                                                                                                                     cAGGGGATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGc                   <  2:1517696/140‑1 (MQ=255)
                                                                                                                        gggATGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAAc                >  2:521616/1‑140 (MQ=255)
                                                                                                                           aTGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGa             <  2:408627/140‑1 (MQ=255)
                                                                                                                           aTGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGa             <  2:1307430/140‑1 (MQ=255)
                                                                                                                           aTGGGCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAGGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGa             <  1:341480/140‑1 (MQ=255)
                                                                                                                             gggCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGAtg           >  1:80673/1‑140 (MQ=255)
                                                                                                                               gCTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGAtgtg         <  1:1258440/140‑1 (MQ=255)
                                                                                                                                cTACTGGCGTATCACCTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCATTCCAGTTAGTCAAAATGGCTCACGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGc        <  2:292152/140‑1 (MQ=255)
                                                                                                                                cTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGc        <  1:223091/140‑1 (MQ=255)
                                                                                                                                cTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGc        <  1:223113/140‑1 (MQ=255)
                                                                                                                                cTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGc        >  2:1613393/1‑140 (MQ=255)
                                                                                                                                cTACTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGc        <  1:137675/140‑1 (MQ=255)
                                                                                                                                cTACTGGCGTATCAACTTTTCAGCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTGCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGc        <  1:137583/140‑1 (MQ=255)
                                                                                                                                  aCTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGCtg      >  2:256132/1‑140 (MQ=255)
                                                                                                                                  aCTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGCtg      >  1:81227/1‑140 (MQ=255)
                                                                                                                                  aCTGGCGTATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGCtg      >  2:983740/1‑140 (MQ=255)
                                                                                                                                      gcgtATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGCtggtgg  <  1:983740/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GCTGCGCTGGGCAGGCCGGTAGAACTGACGGTGTTCGACTCGCCGCGCGATATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGCGAAGAGAGTTGGGCAACGGATGTGCTGGTGG  >  CP009273/4566382‑4566655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A