Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F412 I2 R1	70	105.0	5244496	94.3%	4945559	100.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	432,179	C→T	intergenic (‑166/+133)	tsx ← / ← yajI	nucleoside channel, receptor of phage T6 and colicin K/putative lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	432,179	0	C	T	99.1%	370.9 / ‑4.7	109	intergenic (‑166/+133)	tsx/yajI	nucleoside channel, receptor of phage T6 and colicin K/putative lipoprotein
Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (41/67); total (42/67)
Fisher's exact test for biased strand distribution p-value = 3.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01

Only 100 of 111 total aligned reads displayed.

GTATACAGAGGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAA  >  NC_000913/432082‑432274

gTATACAGAGGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTacatac                                                                                               <  1:724852/100‑1 (MQ=255)

   taCAGAGGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACAtt                                                                                            >  1:673857/1‑100 (MQ=255)

     cAGAGGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTcg                                                                                          <  1:2328912/100‑1 (MQ=255)

      agagGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTcgg                                                                                         <  1:195079/100‑1 (MQ=255)

       gaggagCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTcggg                                                                                        <  1:1690116/100‑1 (MQ=255)

        aggagCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTcgggc                                                                                       <  1:2551504/100‑1 (MQ=255)

           agCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTcgggcggg                                                                                    <  2:37935/100‑1 (MQ=255)

            gCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCgggg                                                                                   <  1:2502802/100‑1 (MQ=255)

            gCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCgggg                                                                                   <  2:701614/100‑1 (MQ=255)

                attatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTg                                                                               >  1:1625713/1‑100 (MQ=255)

                 ttatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTGCGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGt                                                                              <  2:2410672/100‑1 (MQ=255)

                  tataAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTa                                                                             >  2:1361231/1‑100 (MQ=255)

                   ataAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTAc                                                                            <  2:1066444/100‑1 (MQ=255)

                   ataAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTAc                                                                            >  2:1697724/1‑100 (MQ=255)

                   ataAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTGACATACATTCGGGCGGGGATTGTAc                                                                            <  2:1564497/100‑1 (MQ=255)

                    taAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACt                                                                           >  1:1715508/1‑100 (MQ=255)

                    taAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGCATTGTACt                                                                           <  2:2486514/100‑1 (MQ=255)

                    taAAAATCATTGCTCACAAAAATATGTTTCGTCTAACAGCTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACt                                                                           >  1:674751/1‑100 (MQ=255)

                     aaaaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTg                                                                          >  2:596300/1‑100 (MQ=255)

                      aaaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGTGGATTGTACTGa                                                                         <  1:1422838/100‑1 (MQ=255)

                       aaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGAc                                                                        <  1:1727320/100‑1 (MQ=255)

                       aaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGAc                                                                        >  2:1145968/1‑100 (MQ=255)

                           cATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTc                                                                    <  1:180942/100‑1 (MQ=255)

                           cATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTc                                                                    >  2:605012/1‑100 (MQ=255)

                             ttGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGCTTGTACTGACTTTCGc                                                                  <  2:1966524/100‑1 (MQ=255)

                             ttGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGc                                                                  <  1:2549087/100‑1 (MQ=255)

                              tGCACACAAAAATATGTTTCGATTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGcn                                                                 <  2:449149/100‑2 (MQ=255)

                               gCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGccc                                                                <  2:1593716/100‑1 (MQ=255)

                               gCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGccc                                                                <  2:2372653/100‑1 (MQ=255)

                                  cacaAAAATATGTTTCGTTTCCCAGTTCTATCATTTACGTAATCGCTTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg                                                             >  2:1930229/1‑100 (MQ=255)

                                  cacaAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGTATTGTACTGACTTTCGCCCttg                                                             >  2:1623220/1‑100 (MQ=255)

                                  cacaAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg                                                             >  1:2584669/1‑100 (MQ=255)

                                  cacaAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg                                                             >  2:1934837/1‑100 (MQ=255)

                                  cacaAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttg                                                             <  1:1002205/100‑1 (MQ=255)

                                    caAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttgtt                                                           >  2:2574240/1‑100 (MQ=255)

                                    caAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttgtt                                                           >  1:1382934/1‑100 (MQ=255)

                                     caaaaTATGTTTCGTTTCACAGTTCTATCATTTATTTAATCGATTGTGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCttgttg                                                          <  2:1816034/99‑1 (MQ=255)

                                       aaaTATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCa                                                        <  1:2211972/100‑1 (MQ=255)

                                          tatGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCaaan                                                     <  2:2009906/100‑2 (MQ=255)

                                           atGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACt                                                    <  2:1580755/100‑1 (MQ=255)

                                             gtttcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACttt                                                  >  2:1678477/1‑100 (MQ=255)

                                                tcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc                                               <  1:985010/100‑1 (MQ=255)

                                                tcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc                                               <  2:1007365/100‑1 (MQ=255)

                                                tcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc                                               <  1:909620/100‑1 (MQ=255)

                                                tcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc                                               <  2:2164372/100‑1 (MQ=255)

                                                tcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc                                               >  1:2465143/1‑100 (MQ=255)

                                                  gtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTa                                             <  1:1892123/100‑1 (MQ=255)

                                                  gtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTa                                             <  1:1518703/100‑1 (MQ=255)

                                                    ttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATc                                           >  2:229105/1‑100 (MQ=255)

                                                     tcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCa                                          >  2:1774956/1‑100 (MQ=255)

                                                     tcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCa                                          >  2:1064661/1‑100 (MQ=255)

                                                      cacaGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCaa                                         <  2:426078/100‑1 (MQ=255)

                                                      cacaGTTCTATCATTTACGTAATCGATTACGTTCACCTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCaa                                         <  1:2485560/100‑1 (MQ=255)

                                                        caGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATc                                       >  2:1069855/1‑100 (MQ=255)

                                                         aGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATcc                                      <  2:1305279/100‑1 (MQ=255)

                                                         aGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATcc                                      <  2:1838866/100‑1 (MQ=255)

                                                          gTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCa                                     >  2:454120/1‑100 (MQ=255)

                                                           ttCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAg                                    <  1:795421/100‑1 (MQ=255)

                                                            tCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAgg                                   <  1:1429468/100‑1 (MQ=255)

                                                            tCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAgg                                   <  1:467239/100‑1 (MQ=255)

                                                            tCTATCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAgg                                   <  2:1378817/100‑1 (MQ=255)

                                                              tATCATTTACGTGATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTg                                 <  1:302056/100‑1 (MQ=255)

                                                                tCATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGAt                               <  1:972735/100‑1 (MQ=255)

                                                                 cATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGTATTGTACTGACTTTCGCCCTTGTTGCAGACTGTTACTATCAATCCAGGTGATg                              >  2:2456317/1‑100 (MQ=255)

                                                                 cATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATg                              >  2:1450968/1‑100 (MQ=255)

                                                                 cATTTACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATg                              <  2:1271659/100‑1 (MQ=255)

                                                                   tttACGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTa                            <  1:283451/100‑1 (MQ=255)

                                                                      aCGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGc                         <  2:1967855/100‑1 (MQ=255)

                                                                       cGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGcn                        <  1:1060197/100‑2 (MQ=255)

                                                                       cGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCa                        <  1:188715/100‑1 (MQ=255)

                                                                       cGTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCa                        <  2:1603416/100‑1 (MQ=255)

                                                                        gTAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCag                       <  1:1538035/100‑1 (MQ=255)

                                                                        gTAATCGATTGCGTTCACGTTTACATACATTCGGGCGCGGATTGTACTGACTTTCGTCATTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCag                       <  2:1368753/100‑1 (MQ=255)

                                                                         tAATCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCaga                      >  2:1527702/1‑100 (MQ=255)

                                                                           aTCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGt                    >  2:1882963/1‑100 (MQ=255)

                                                                            tCGATTGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTa                   <  1:1656715/100‑1 (MQ=255)

                                                                               aTTGCGTTCACGTTTACATACAGTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACa                >  1:2209356/1‑100 (MQ=255)

                                                                                 tGCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaa              <  2:2132365/100‑1 (MQ=255)

                                                                                  ncGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaaa             >  1:2099553/2‑100 (MQ=255)

                                                                                  gCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaaa             >  2:56925/1‑100 (MQ=255)

                                                                                  gCGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaaa             <  1:742892/100‑1 (MQ=255)

                                                                                   cGTTCAGGTTTATATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTATTATCAATCCAGGTGATGTATGCAGACTACAAAAAt            >  2:1852566/1‑100 (MQ=255)

                                                                                   cGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt            >  2:724783/1‑100 (MQ=255)

                                                                                   cGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt            <  1:732362/100‑1 (MQ=255)

                                                                                   cGTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt            >  2:1059598/1‑100 (MQ=255)

                                                                                    gTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATg           <  2:1523184/100‑1 (MQ=255)

                                                                                    gTTCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTGCGCCCTTCTTGCACACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTACCTAAATg           >  1:2507769/1‑100 (MQ=255)

                                                                                     ttCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGa          >  1:784438/1‑100 (MQ=255)

                                                                                      tCACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGAc         >  2:1910519/1‑100 (MQ=255)

                                                                                       cACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACg        >  1:1007234/1‑100 (MQ=255)

                                                                                       cACGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACg        >  1:1704940/1‑100 (MQ=255)

                                                                                        aCGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGCCgg       <  2:898253/100‑1 (MQ=255)

                                                                                         cGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCTAGGTGATGTAAGCAGAGTAACAAAATGACggg      >  1:2421173/1‑100 (MQ=255)

                                                                                         cGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACggg      <  1:459399/100‑1 (MQ=255)

                                                                                         cGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACggg      <  1:1687195/100‑1 (MQ=255)

                                                                                         cGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACggg      <  1:1606859/100‑1 (MQ=255)

                                                                                         cGTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACggg      <  1:1231902/100‑1 (MQ=255)

                                                                                          gTTTACATACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACgggg     <  1:2361159/100‑1 (MQ=255)

                                                                                          gTTTAAATACATGCGGGCGGGGATTGTACTAAATTTCGCCATTGTAGCAAACTTTTACTAACAATCCGGGTGATGTCAGCAAAGTATCAATATGACggtg     <  2:1470587/100‑3 (MQ=255)

                                                                                             tacatacaTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGaaa  >  1:138513/1‑100 (MQ=255)

GTATACAGAGGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGGGAAA  >  NC_000913/432082‑432274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A