Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I2 R1
|
70 |
105.0 |
5244496 |
94.3% |
4945559 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
999,709 |
(C)6→7 |
coding (494/2601 nt) |
elfC → |
putative outer membrane fimbrial subunit export usher protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 999,703 | 1 | . | C | 94.1%
| 271.2
/ 12.7
| 85 | coding (488/2601 nt) | elfC | putative outer membrane fimbrial subunit export usher protein |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base C (42/38); total (45/40) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
AGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑CC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGAT > NC_000913/999604‑999797
|
agaTTATGCTGGATGCCAGCGTAGCGTTTAAGGTGAATAAACGCCGTCTGGAAACTTCAGTACCGCAAATCGCCATCAAAAGTATTGCCCGTGGTTATGt < 1:2300612/100‑1 (MQ=255)
gaTTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑c > 1:547073/1‑100 (MQ=255)
attattCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc > 1:1776882/1‑100 (MQ=255)
ttattCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑c < 1:1254102/100‑1 (MQ=255)
tattCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑cc > 2:1064670/1‑100 (MQ=255)
attCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑ccc < 2:867181/100‑1 (MQ=255)
tCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑ccccc > 1:2074612/1‑99 (MQ=255)
tCCGGATGCCAGCGTAACGTTTAATGTCAATAAACTCCGTTGGGTAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGGGGTTATGT‑cc‑ccccc < 2:2477094/100‑2 (MQ=255)
ccGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑ccccct < 1:2594867/100‑3 (MQ=255)
ccGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑ccccct > 1:1407166/1‑98 (MQ=255)
ccGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑cc‑ccccct < 1:744049/100‑3 (MQ=255)
gATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATGGCCGTCAAAAGTAATGCCCGTGGTTATGT‑cc‑ccccctgaa < 2:2435371/100‑6 (MQ=255)
tGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCGGTGGTTATGTCCC‑CCCCTGAACg > 2:2485817/1‑100 (MQ=255)
tGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACg < 1:1662305/100‑1 (MQ=255)
ccAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGtt > 2:61042/1‑100 (MQ=255)
cAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTg > 1:820187/1‑100 (MQ=255)
aGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTgg < 2:1753002/100‑1 (MQ=255)
aGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTgg < 1:480426/100‑1 (MQ=255)
aGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTgg < 1:534540/100‑1 (MQ=255)
cGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGa < 2:2125237/100‑1 (MQ=255)
cGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGa < 2:2125562/100‑1 (MQ=255)
gTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGAt > 1:332560/1‑100 (MQ=255)
gTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGAt > 1:2124910/1‑100 (MQ=255)
gTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAACGCCCGTGGTTCTGTCCC‑CCCCTGAACGTTGCGAt > 1:1011131/1‑100 (MQ=255)
tAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATg > 1:1826204/1‑100 (MQ=255)
cGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAg < 1:1250898/100‑1 (MQ=255)
gTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAgg > 1:1693282/1‑100 (MQ=255)
gTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAgg > 1:2643939/1‑100 (MQ=255)
tAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCATAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGAt > 1:2560214/1‑100 (MQ=255)
aaTGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATc < 1:304870/100‑1 (MQ=255)
tgtgAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCaa > 2:979831/1‑100 (MQ=255)
gtgAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAAc > 2:2182982/1‑100 (MQ=255)
gtgAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑CC‑CCCCTGAACGTTGGGATGAAGGGATCAAcg > 1:1337366/1‑100 (MQ=255)
aTAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACgcgc < 2:2069838/100‑1 (MQ=255)
aTAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACgcgc < 2:2070072/100‑1 (MQ=255)
aTAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACgcgc < 1:53249/100‑1 (MQ=255)
aTAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACgcgc > 1:577351/1‑100 (MQ=255)
tAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCt < 1:2557991/100‑1 (MQ=255)
tAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCt < 1:76943/100‑1 (MQ=255)
aaCTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTAt > 2:14898/1‑100 (MQ=255)
aCTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTAtt < 2:1670299/100‑1 (MQ=255)
cgccGTCGGGAAAGTTCAGGACCGCAAATCGCCATCAAAAGTAATTCCCGTGGTTATGT‑CC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTAc < 1:1314419/98‑1 (MQ=255)
cTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTa < 1:2453036/100‑1 (MQ=255)
cTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGT‑GTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTAc > 2:1704649/1‑100 (MQ=255)
ccGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACt < 2:1801840/100‑1 (MQ=255)
cGTCTGGAAAGTTCAGTACCGCAAATCGCCATCAAAAGTAATGCGCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGTAGGGATCAACGCGCTATTACTg < 2:1002291/100‑1 (MQ=255)
gTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTgg < 2:2178262/100‑1 (MQ=255)
gTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTgg < 1:2123704/100‑1 (MQ=255)
tCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTggg < 2:677485/100‑1 (MQ=255)
tGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGat > 1:1562999/1‑100 (MQ=255)
tGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGat > 2:123729/1‑100 (MQ=255)
tGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGat > 1:30428/1‑100 (MQ=255)
ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTCCTGGGata > 2:274554/1‑100 (MQ=255)
ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGata > 2:2338135/1‑100 (MQ=255)
ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGata > 1:547949/1‑100 (MQ=255)
ggAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGata > 2:2026931/1‑100 (MQ=255)
ggAAATTTCAGTACCGCAAACCGCCATCAAAAGTAATGCCCGTTGTTATGTCCC‑CCCCTGAACGATGGAATGAAGGGATCAACGCGCTATTACTGGGata > 2:655187/1‑100 (MQ=255)
gAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGatat > 2:1768706/1‑100 (MQ=255)
aaaTTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATAtt > 2:1170598/1‑100 (MQ=255)
aaaTTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATAtt < 2:1497899/100‑1 (MQ=255)
aaTTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTc > 2:1198588/1‑100 (MQ=255)
tttCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGt > 2:1776212/1‑100 (MQ=255)
tttCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGt > 1:266014/1‑100 (MQ=255)
ttCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGtt > 2:50759/1‑100 (MQ=255)
aGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑CC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc < 1:351278/100‑1 (MQ=255)
gTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑CC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCg > 1:1744777/1‑100 (MQ=255)
aCCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGTTATTACTGGGATATTCGTTTAGCgg > 1:771139/1‑100 (MQ=255)
ccGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGACGCAGCGAACAACGCGCTATTACTGGGATATTCGTTTaaaggc > 2:757083/1‑95 (MQ=255)
cAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCt > 2:243190/1‑100 (MQ=255)
aaaTCGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTa < 2:922487/100‑1 (MQ=255)
cGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAg > 2:1036777/1‑100 (MQ=255)
cGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAg < 1:1597764/100‑1 (MQ=255)
cGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAg > 2:2275586/1‑100 (MQ=255)
cGCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAg < 1:380181/100‑1 (MQ=255)
gCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAgn < 2:645845/100‑2 (MQ=255)
gCCATCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGt < 1:2263891/100‑1 (MQ=255)
ccATCAAAAGTAATGCCCGTGGTTATGT‑CCACCACTGAAAGTTGGGATGAAGGGATCAACGCGGTATTACTGGGATATTCGTTTAGCGGGGCTAAAAGTa > 2:450758/1‑100 (MQ=255)
aTCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTAtt > 2:1333784/1‑100 (MQ=255)
tCAAAAGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTc < 2:56273/100‑1 (MQ=255)
aaaaGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCAt < 2:322433/100‑1 (MQ=255)
aGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATagc < 2:805723/100‑1 (MQ=255)
aGTAATGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATagc < 1:1979013/100‑1 (MQ=255)
aaTGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATagcagc < 2:925275/100‑1 (MQ=255)
aaTGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATagcagc < 1:2330049/100‑1 (MQ=255)
aTGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcg < 2:87359/100‑1 (MQ=255)
tGCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcgc < 1:1201249/100‑1 (MQ=255)
gCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa > 1:1086039/1‑100 (MQ=255)
gCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa > 2:804912/1‑100 (MQ=255)
gCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa > 1:1992235/1‑100 (MQ=255)
gCCCGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa > 2:563354/1‑100 (MQ=255)
cccGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAg < 2:1199003/100‑1 (MQ=255)
cccGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAg < 1:2221160/100‑1 (MQ=255)
ccGTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGa > 1:143129/1‑100 (MQ=255)
gTGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGAcn < 1:867494/100‑2 (MQ=255)
tGGTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAg > 1:1679577/1‑100 (MQ=255)
ggTTATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGt < 1:1461553/100‑1 (MQ=255)
tATGTCCC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGAt > 1:1993515/1‑100 (MQ=255)
|
AGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGT‑CC‑CCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGAT > NC_000913/999604‑999797
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
