Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I2 R1 70 105.0 5244496 94.3% 4945559 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,282,608 A→G G156G (GGT→GGC)  yjcF ← pentapeptide repeats protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,282,6080AG97.4% 378.8 / ‑1.5 115G156G (GGT→GGC) yjcFpentapeptide repeats protein
Reads supporting (aligned to +/- strand):  ref base A (2/1);  new base G (56/55);  total (58/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 115 total aligned reads displayed.

AATTCGTTTTATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATACCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATAAAAT  >  NC_000913/4282511‑4282702
                                                                                                 |                                                                                              
aaTTCGTTTTATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGcc                                                                                              >  2:1307771/1‑100 (MQ=255)
     gTTTTATACATATTACAGTCCTGAAGAATAGCGTTTTGTAGTCTGCAGCCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCa                                                                                         >  1:2364636/1‑100 (MQ=255)
     gTTTTATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCACAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCa                                                                                         >  2:696267/1‑100 (MQ=255)
     gTTTTATACATATTACAGTCCTGAAAAATAGCGCTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCa                                                                                         >  2:2148705/1‑100 (MQ=255)
      ttttATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAg                                                                                        <  1:1156534/100‑1 (MQ=255)
       tttATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAgg                                                                                       <  1:57038/100‑1 (MQ=255)
       tttATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAgg                                                                                       >  1:1631758/1‑100 (MQ=255)
            aCATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAg                                                                                  >  2:1426976/1‑100 (MQ=255)
             cATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAgg                                                                                 <  2:1645076/100‑1 (MQ=255)
             cATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAgg                                                                                 <  1:1848336/100‑1 (MQ=255)
              ntatTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGgt                                                                                >  1:1147826/2‑100 (MQ=255)
              atatTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGgt                                                                                >  2:1895723/1‑100 (MQ=255)
               tatTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGgtg                                                                               <  1:443667/100‑1 (MQ=255)
               tatTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGgtg                                                                               <  2:45472/100‑1 (MQ=255)
                atTAGAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATACCTTTTAGGCTAAGgtgt                                                                              >  2:2203443/1‑100 (MQ=255)
                atTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGgtgt                                                                              >  1:2579754/1‑100 (MQ=255)
                 ttACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGtgtg                                                                             <  1:2423636/100‑1 (MQ=255)
                  tACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGa                                                                            >  2:1895883/1‑100 (MQ=255)
                    cAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGaaa                                                                          >  1:876799/1‑100 (MQ=255)
                      gTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGaaaaa                                                                        >  2:1828893/1‑100 (MQ=255)
                        ccTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATc                                                                      >  1:571875/1‑100 (MQ=255)
                         cTGAAAAATAGCGTTTTGTAGTCTGGAACCTGCAAAATTCGAATTGGCTAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAGATCg                                                                     >  1:2367998/1‑100 (MQ=255)
                         cTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCg                                                                     >  1:918079/1‑100 (MQ=255)
                         cTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCg                                                                     >  1:1603029/1‑100 (MQ=255)
                          tGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGt                                                                    >  1:1676082/1‑100 (MQ=255)
                          tGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGt                                                                    <  2:1350031/100‑1 (MQ=255)
                           gAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTa                                                                   <  1:225974/100‑1 (MQ=255)
                            aaaaaTAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTaa                                                                  <  1:1681057/100‑1 (MQ=255)
                             aaaaTAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAac                                                                 <  2:1481920/100‑1 (MQ=255)
                               aaTAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAacca                                                               >  2:1181184/1‑100 (MQ=255)
                                  aGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAAccacca                                                            <  1:2133745/100‑1 (MQ=255)
                                  aGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAAccacca                                                            >  1:686228/1‑100 (MQ=255)
                                    cGTTTTGTAGTCTGCCACAAGAAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGAGGCCTTTCAGGCGAAGATTTGAAAAGTCGGAACCACCAtt                                                          <  2:961361/100‑1 (MQ=255)
                                    cGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCAtt                                                          <  2:961395/100‑1 (MQ=255)
                                       tttGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTAc                                                       <  1:2183064/100‑1 (MQ=255)
                                         tGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActg                                                     <  2:1952808/100‑1 (MQ=255)
                                         tGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActg                                                     >  1:2123795/1‑100 (MQ=255)
                                         tGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActg                                                     >  1:182955/1‑100 (MQ=255)
                                           tAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActgtc                                                   <  2:1609380/100‑1 (MQ=255)
                                           tAGTCGGCAACCTGCAAAATCCGAATTGGATAAATCTTCATCGTTAAACACGATGCCTTTCAGGCTAAGGTGGGAAAAGTCGTAACCACCATTTActgtc                                                   <  2:532185/100‑1 (MQ=255)
                                            aGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActgtct                                                  >  1:1663169/1‑100 (MQ=255)
                                             gTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTActgtctg                                                 >  1:1100134/1‑100 (MQ=255)
                                               cTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCtgtg                                               >  2:2005528/1‑100 (MQ=255)
                                               cTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCtgtg                                               <  1:1260003/100‑1 (MQ=255)
                                                tGCAACCTGAAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGAgg                                              <  2:2350733/100‑1 (MQ=255)
                                                 gCAACCTGCAAAATTCGAATTGGATAAATCTTCAGCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTggg                                             >  2:2401133/1‑100 (MQ=255)
                                                    aCCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGAtt                                          <  1:1538969/100‑1 (MQ=255)
                                                    aCCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGAtt                                          >  1:1252329/1‑100 (MQ=255)
                                                     ccTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGAttt                                         <  2:1225950/100‑1 (MQ=255)
                                                      ctacAAAATTCAAATTAGATAAATCTTCATCTTTAATCACCATCCCTTTCAACCTAAAATATCAAAAATCGTAACCACCATTTACTGTCTCTGAGATTTc                                        <  2:114940/97‑1 (MQ=255)
                                                      cTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTc                                        >  1:1061153/1‑100 (MQ=255)
                                                       tGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACTATTTACTGTCTGTGGGATTTCg                                       <  2:1555404/100‑1 (MQ=255)
                                                       tGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCg                                       <  1:1249134/100‑1 (MQ=255)
                                                       tGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCg                                       <  2:1387463/100‑1 (MQ=255)
                                                         cAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGAt                                     <  2:1017430/100‑1 (MQ=255)
                                                         cAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGAt                                     <  2:1201521/100‑1 (MQ=255)
                                                          aaaaTTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATa                                    <  1:2336331/100‑1 (MQ=255)
                                                           aaaTTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAg                                   >  2:545302/1‑100 (MQ=255)
                                                           aaaTTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAg                                   >  1:1591114/1‑100 (MQ=255)
                                                           aaaTTCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAg                                   <  1:466551/100‑1 (MQ=255)
                                                             nttCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGANAGta                                 >  1:852597/2‑100 (MQ=255)
                                                              ttCGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtat                                <  1:1331683/100‑1 (MQ=255)
                                                                cGAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtatta                              >  2:3564/1‑100 (MQ=255)
                                                                 naaTTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattat                             >  1:2505779/2‑100 (MQ=255)
                                                                 gAATTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattat                             <  1:1521876/100‑1 (MQ=255)
                                                                  aaTTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattatt                            <  2:942897/100‑1 (MQ=255)
                                                                   aTTGGATAAATCTTCATCTTTAATTACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattatta                           >  2:2553095/1‑100 (MQ=255)
                                                                   aTTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattatta                           >  1:1448400/1‑100 (MQ=255)
                                                                   aTTGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTAATGTCTGTGGGATTTCGATAGtattatta                           <  2:1493899/100‑1 (MQ=255)
                                                                   aTTGGATAAATCTTCATCTCTAATCACGTTGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattatta                           <  2:2705/100‑1 (MQ=255)
                                                                    ttGGATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGtattattat                          >  1:329121/1‑100 (MQ=255)
                                                                      ggATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATgg                        >  2:610821/1‑100 (MQ=255)
                                                                       gATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGa                       >  2:753099/1‑100 (MQ=255)
                                                                       gATAAATCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGa                       <  1:585409/100‑1 (MQ=255)
                                                                       gATAAATCTTCATCTTTAATCACGAAGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGCATTATTATgca                       >  2:2073545/1‑98 (MQ=255)
                                                                          aaaTCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACgg                    <  2:1683715/100‑1 (MQ=255)
                                                                           aaTCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGt                   >  1:2355277/1‑100 (MQ=255)
                                                                             tCTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGa                 >  1:2381541/1‑100 (MQ=255)
                                                                              cTTCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGAc                <  1:41535/100‑1 (MQ=255)
                                                                               ttCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACa               >  1:869363/1‑100 (MQ=255)
                                                                               ttCATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACCGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACa               >  2:2076761/1‑100 (MQ=255)
                                                                                ncATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACat              >  1:2098248/2‑100 (MQ=255)
                                                                                 cATCTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACatt             >  1:279607/1‑100 (MQ=255)
                                                                                  aTCTTTAATCACGATACCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACatta            >  1:2601255/1‑100 (MQ=255)
                                                                                    cTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACattatt          >  1:63057/1‑100 (MQ=255)
                                                                                    cTTTAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACattatt          <  2:2107687/100‑1 (MQ=255)
                                                                                     tttAATCACGATGCCTTTCAGGCTAAGGTGTGAAAATTCGTAGCCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACAttattt         <  2:1378900/100‑1 (MQ=255)
                                                                                      ttAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACAttattta        <  1:2036705/100‑1 (MQ=255)
                                                                                      ttAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACAttattta        <  2:1597354/100‑1 (MQ=255)
                                                                                      ttAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACAttattta        >  1:1750420/1‑100 (MQ=255)
                                                                                      ttAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACAttattta        >  2:2247500/1‑100 (MQ=255)
                                                                                       tAATCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACAttatttat       >  2:2377215/1‑100 (MQ=255)
                                                                                        aaTCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTtata      >  1:2431032/1‑100 (MQ=255)
                                                                                        aaTCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTtata      <  2:2241949/100‑1 (MQ=255)
                                                                                         aTCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATaa     <  2:224691/100‑1 (MQ=255)
                                                                                         aTCACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTAGATAGTATTATTATGGACGGTGACATTATTTATaa     <  2:947009/100‑1 (MQ=255)
                                                                                           cACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATaaaa   <  1:898781/100‑1 (MQ=255)
                                                                                           cACGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATaaaa   <  1:898773/100‑1 (MQ=255)
                                                                                            aCGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATAAAat  <  1:2041279/100‑1 (MQ=255)
                                                                                            aCGATGCCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATAAAat  <  1:978545/100‑1 (MQ=255)
                                                                                                 |                                                                                              
AATTCGTTTTATACATATTACAGTCCTGAAAAATAGCGTTTTGTAGTCTGCAACCTGCAAAATTCGAATTGGATAAATCTTCATCTTTAATCACGATACCTTTCAGGCTAAGGTGTGAAAAATCGTAACCACCATTTACTGTCTGTGGGATTTCGATAGTATTATTATGGACGGTGACATTATTTATAAAAT  >  NC_000913/4282511‑4282702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A