Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F406 I0 R1
|
35 |
111.3 |
2499574 |
96.3% |
2407089 |
209.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,149,907 |
A→C |
22.2% |
V360G (GTG→GGG) |
yegI ← |
protein kinase‑related putative non‑specific DNA‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,149,907 | 0 | A | C | 22.2%
| 104.3
/ 8.3
| 71 | V360G (GTG→GGG) | yegI | protein kinase‑related putative non‑specific DNA‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (33/21); new base C (3/14); total (36/35) |
| Fisher's exact test for biased strand distribution p-value = 2.16e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTACGCTTTGCTTGTCAGACTGCCAATAATCCAGATAGCCGCCAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAGTGCCGCTACCCACGCTTTAGCCGTCGGACGCCCG > NC_000913/2149672‑2150125
|
gTACGCTTTGCTTGTCAGACTGCCAATAATCCAGATAGCCGCCAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCa < 1:61276/239‑1 (MQ=255)
tGCCAATAATCCAGATAGCCGCCAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTAACTACG‑CCCTCACCCTCGCCCCGACTTTTGCCAGc > 1:1171042/1‑239 (MQ=255)
tgccagcaaGCAAAGGAACAAAAAAAATAAACCGGGGTTCTGCGAAAAGGCCGAAAAGCAGAGGAGATAATGCTGACAGTGCGATCCCAGGAAGAATGTTGTATTCGCCCCGAACCAGCCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAAGGATCGGGTAATGGCAGTTGC‑AAGGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGCCTTTCGCCAGCACAAAA‑TTCccgccg < 2:930943/231‑1 (MQ=255)
gccgccAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTTCCGCCggt > 1:497264/1‑239 (MQ=255)
ccgccAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGGGCTACTGACG‑CCCTCACCATTGCCCAGACTTTCGCCAGCACCAAA‑TTTCCGCCcgtg > 1:1087641/1‑239 (MQ=255)
cgccAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCCGACTTTCGCCAGCACAAAA‑ATTCCGCCcgtgg > 1:811368/1‑239 (MQ=255)
gAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTTC‑AATGCTGGCGGGGGTACTGACG‑CCATCACCATCGCCCCGACTTTCGCCAGCACAAAATTTCCCCCCggtggaattggccct > 2:335195/1‑229 (MQ=255)
aataatATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGca < 1:739393/203‑1 (MQ=255)
aCGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGGAATGACCTCTTCGCCGAGATCAATaa > 1:879360/1‑239 (MQ=255)
cgcgGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCCGACTTTTGCCAGCCCAAAA‑TTCCCGCCGGTGGCAATGACCCCTTCGCCGGGAt > 1:97197/1‑232 (MQ=255)
cgcgGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATTACCTCTTCGCCCGGATCCCTaaa > 1:1025767/1‑239 (MQ=255)
cgcgGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCCATaaa > 1:1154919/1‑239 (MQ=255)
cgcgGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCCCCCCGACTTTCGCCAGCCCCAAA‑TTCCCCCCGGTGGTAATTACCTCTTCGCCGAGGTCCATaaa > 1:795753/1‑239 (MQ=255)
ttCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAGTGGCAGTTGC‑AATGCTGGCGGTGGTACTGACGCCCACCACCA‑CGCCCCGAATTTTGCCCGCGCAAAA‑ATTCCGCCCGGGGGAATGAACCCTTTGCCCCGGTCAATtaaaaaag > 2:1182424/1‑235 (MQ=255)
ttCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAAGGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTGGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCgg < 1:472702/203‑1 (MQ=255)
ccTGAAGGCCGAAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGTTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCgag < 1:557903/220‑1 (MQ=255)
cggAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAacac < 1:335195/237‑1 (MQ=255)
aGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGGTACTGAAG‑CCATCACCATCGCCCAGAATTTCGCCCGCCCAAAA‑ATCCCGCCGGGGGGAATGAACCCCTCGCCGAGGTCACTAAAATAGTGTACACCTTg > 2:1078881/1‑239 (MQ=255)
aGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGGGCTACTGACG‑CCATCCCCATCGCCCAGACTTTTGCCCGCACAAAA‑TTCCCGCCGGGGGGGATGAc > 2:472702/1‑203 (MQ=255)
aGGCCGAAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGAGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGGGTTACTGACG‑CCATACCCATCGCCCAGACTTTTGCCCGGCCAAAA‑TTTCCCCCCGGGGGAATGAGCCCCTTGCCGCGATCAATAAAAAAAATAacac > 2:281534/1‑235 (MQ=255)
gCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGGGGTAATGACCTCTTCTCCGAGATCAATAAAATAGATAACACCTTGATTa > 1:1027538/1‑238 (MQ=255)
gCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGGGGTACCGACG‑GCACTACCATCGCCCCAACTTTCGCCAGCACAAAA‑TTTCCGCCGGTGGTAAAGACCTCTTTGCCCAGATCAATAACATAGCTAACAccccgagta > 2:1077671/1‑231 (MQ=255)
cGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCCTCGCCCAGACTTTTGCCAGCCCAAAA‑TTCCCGCCGGGGGGAATGAACTCTTCGCCGAGGTCAATTAAATAGATAACACCCTGATTTTcccacgccaacc > 2:370021/1‑229 (MQ=255)
cGATAATGCTGACAGTGCGATCCCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCgag < 1:153978/198‑1 (MQ=255)
gATAATGCTGACGGTGAGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑Gcaca < 1:136699/236‑1 (MQ=255)
aaTAAGGCTGACGGTGCGATCTCAAGCAGAATGAGGTATTGGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCacac < 1:370021/236‑1 (MQ=255)
cAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGGAATGACCTCTTCGCCGAGATCAATAAAAAAGATAAAACCTTGATATACCAGC‑Gcaaa > 1:807110/1‑223 (MQ=255)
cGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTTACG‑CCATCCCCCTCGCCCAGACTTTCGCCCGCCCAAAA‑TTCCCGCCGGGGGGAATGACCCCTTTGCCGAGGTCAATAAAATAGATAAAACCCTGGTTTTTCAAG‑GCACAACACCGGCAGTCCGT‑Taaa > 2:1002374/1‑239 (MQ=255)
tctaAAGCAGAATGTTGTTTCCGCCCCGAAACGGGCCAAAAGGAGGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGCCG‑CCATCCCCATCGCCCAGACTTTCGCCAGCAAAAAA‑TTCCCGCCGGTGGTAATGACctct < 2:829961/170‑1 (MQ=255)
ctcAAGCAGAATGATGTATCCGGCCCGAAACAGGCCAAAAGGAACCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TCCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAg < 1:1078881/239‑1 (MQ=255)
ctcAAGCAGAAGGATGTATTCGCGCCGTAACGGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAGTGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAg < 1:1182424/239‑1 (MQ=255)
aaTGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGa < 1:711589/155‑1 (MQ=255)
aaTGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTTGCCAGCACAAAA‑TTCCCGCCGGGGGTAATGACCCCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCAAAC‑GCACACCACCGGCAGTCAGT‑TCAATTAGAGGGGGaaa > 2:167639/1‑239 (MQ=255)
aaTGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGAt > 1:829961/1‑170 (MQ=255)
aaTGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGcag < 1:902804/217‑1 (MQ=255)
aaTGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAAAACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTaaa > 1:700091/1‑239 (MQ=255)
aaTGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGGGCTACTGACG‑CCCTCACCATCGCCCAGACTTTTGCCAGCCCCAAA‑TTCCCGCCGGGGGGAATGACCTCTTCGCCGAGATCAATAAAAAAGATAAAACCTTGGTTTTCCACCGGCAAACCACGGG‑AGTCAGTCCAAATGACAGGGTTaa > 2:768775/1‑239 (MQ=255)
tCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGGGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCCAACCACGGGCAGTCAGT‑CCAATGAGCGGGGGAAACATGCAtt > 1:1082334/1‑237 (MQ=255)
tCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGGGGGAATGACCTCTTCGcc > 2:711589/1‑155 (MQ=255)
tCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACCGAAG‑CCATCACCAACGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGGGGGAATGACCCCTTCGCCCAGATCAATAAAATAGATAAAACCTTGATTATCCAGT‑GCACACCCCGGGCAGTCAGT‑Caaaa > 2:902804/1‑216 (MQ=255)
gcgcCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTTCCGCCCGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAAAACCTTGATTATCCAGC‑GCACACCACCGGCAGTCAGT‑CAAATAAGCGGGGTGAACAAGCaat > 2:747639/1‑233 (MQ=255)
gcCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCgag < 1:1136492/154‑1 (MQ=255)
gcCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGGGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑ATCCCGCCGGTGGGAATGACCTCTTCGCCGAGATCAATAAAAAAAGTAACACCTTGATTATCCAGC‑GCACACCACGGGCAGACAGT‑TAAATTAGCAGGGGAAAAATGCACTGCTGaa > 2:423915/1‑239 (MQ=255)
cgtgCCTAAAGGAGGCGGCCTGCC‑AGTCGGTTGAAAATGAGCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCAAGCCTTTCGCCAGCAAAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATAc < 2:700091/236‑1 (MQ=255)
gCCTAAGGGAAGGGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGcag < 1:626438/193‑1 (MQ=255)
gCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTTCTGACG‑CCATTACCATCGCCCAGACTTTTGCCAGCACAAAA‑TTCCCGCCGGGGGTAATGACCCCCTTGTCGCGATCAAAAAAACAGATAAAACCTTGCATTTTCAGT‑GCCAACTACGGGCAGTCAGT‑CAAATGAGCTGGGGAAAAATGGATTGCTGAAACGACAAAtt > 2:135745/1‑239 (MQ=255)
gCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCCTCACCATCGCCCAGACTTTCGCCCGCACAAAA‑TTCCCGCCGGGGGGAATGACCCCTTCGCCGGGATCAATaaaa > 2:1136492/1‑154 (MQ=255)
aaaGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCAAAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCtt < 1:60447/239‑1 (MQ=255)
aaGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCttt > 1:127121/1‑239 (MQ=255)
cgCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTCCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTg < 1:135745/238‑1 (MQ=255)
aggcgacTGCA‑AGTGGGTTGGAAATGGTCGGTTAGTGGCAGTGCC‑AATGCTGGCGGTGCTACTGCCG‑CCATCACACTCCCCCAGACTTTCGCCACCAAAAAT‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTg < 2:1027538/233‑1 (MQ=255)
aGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGGAATGAACCCTTCGCCCAGATCAATAAAAAAGAAAAAACCTTGATTATTCAGC‑GGCAACCACAGGCAGTCAGT‑CAAAt > 2:626438/1‑193 (MQ=255)
aGCGGCCGGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTg < 1:747639/239‑1 (MQ=255)
gCGGCCGGCC‑AGTGGGTTGGAAATGTCCGGGAAAGGGCAGTTGC‑AATGCTGGGGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTg < 2:1025767/238‑1 (MQ=255)
gCGACCGGCC‑AGTCGGTTGGAAAGGAGCGGGTAATGCCAGTTGC‑AATGCTGGCGGTGCTACGGACG‑CCATCACCATCGCCAAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTg < 2:795753/238‑1 (MQ=255)
agggCCTGGCAAGTCGGTAGAAATTGATCGGTTAATGGCATTTCA‑AAGGCTGGCGTTGCACCTGCCG‑CCATCCCCATCGCCAAGACTTCCGCCAGCACAAAT‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTg < 2:1171042/237‑1 (MQ=255)
ggCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGtt < 1:44657/238‑1 (MQ=255)
cTGCC‑AGTCGGTTGAAAATGATCGGGTAAGGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGc < 1:281534/238‑1 (MQ=255)
gcatgTCGGTTGAAAATGCTGGGTTAACGCCA‑TTGCAAATGCTGGCGGTCCACCGGCCC‑CCAACACCACCCCCCAGTCTTTCGCCAGCAAAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTa < 2:1003435/235‑1 (MQ=255)
cattgggTTGAAAATGATGGGGTAAGGGCAGTTGC‑AAGGCTGGCGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTaga < 1:1002374/234‑1 (MQ=255)
gcGGTTGGAAATGCTGGGGTATGGGCAGGTGC‑ATGGCGGGCGGTGCTACTCACG‑CAATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTaga < 2:811368/235‑1 (MQ=255)
ggAAAGGATCGGGTAATGGCAGTGGC‑AATGCTGGCGGTTCTACTGACG‑CAATCACCATCGCCAAGACTTCCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAg < 1:227385/238‑1 (MQ=255)
aattgacGGGAAAGGGCAGTGGC‑AATGCTGGCGTGTCTACGGACG‑CCATCCCCATCGCCAAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAGTGcc < 2:1154919/233‑1 (MQ=255)
cGGGTAATGGAAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCAAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAGTGCCGCTAcc < 1:1217188/239‑1 (MQ=255)
gggTAATGGCATTTGC‑AATGCGTGGGGTGCTACTGACG‑CCATCCCCATCGCCCAGACTTTCGCCAGCACAAAA‑TCCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAGTGCCGCTAcc < 1:1127141/238‑1 (MQ=255)
ttGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAGTGCCGCTACCCACGCTTTa > 1:1172280/1‑235 (MQ=255)
ggCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAg > 2:179960/1‑145 (MQ=255)
ggCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAg < 1:179960/145‑1 (MQ=255)
gCGGTGCTACTGACC‑CCATCACCATCGCCCCGACTTTCGCCAGCACAAAA‑TTCCCGCCCGTGGTAATGACCTCTTCGCCGCGATCAATAAAATAGATAACACCTTGATTATCCCGC‑GCACACCAAGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACAGTTGGGGTAGAGAGGCCAGTGCCGCTACCCACGCTTTTGCAGTCTGATGCCCg > 2:771881/1‑239 (MQ=255)
g‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTg < 2:492845/176‑1 (MQ=255)
g‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTg > 1:492845/1‑176 (MQ=255)
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GTACGCTTTGCTTGTCAGACTGCCAATAATCCAGATAGCCGCCAGCACAGGAACCAAAATAATATAACGCGGTTCTGCCTGAAGGCCGCAAAGCAGCAGCGATAATGCTGACAGTGCGATCTCAAGCAGAATGATGTATTCGCGCCGTAACAGGCCTAAAGGAAGCGGCCTGCC‑AGTCGGTTGGAAATGATCGGGTAATGGCAGTTGC‑AATGCTGGCGGTGCTACTGACG‑CCATCACCATCGCCCAGACTTTCGCCAGCACAAAA‑TTCCCGCCGGTGGTAATGACCTCTTCGCCGAGATCAATAAAATAGATAACACCTTGATTATCCAGC‑GCACACCACGGGCAGTCAGT‑CAAATGAGCGGGGTAAACATGCATTGCTGAAACGATACATTTCTTTAACTGTTGGCGTAGAGAGTCCAGTGCCGCTACCCACGCTTTAGCCGTCGGACGCCCG > NC_000913/2149672‑2150125
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
