Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F406 I0 R1
|
35 |
111.3 |
2499574 |
96.3% |
2407089 |
209.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,173,361 |
Δ2 bp |
100% |
pseudogene (1‑2/442 nt) |
gatC ← |
pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,173,361 | 0 | C | . | 93.4%
| 304.7
/ 7.8
| 76 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/5); new base . (46/25); total (46/30) |
| Fisher's exact test for biased strand distribution p-value = 7.71e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
| * | NC_000913 | 2,173,362 | 0 | C | . | 92.1%
| 296.8
/ 7.9
| 76 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (1/5); new base . (45/25); total (46/30) |
| Fisher's exact test for biased strand distribution p-value = 3.27e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAA > NC_000913/2173125‑2173595
||
aTTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATaccaccg < 1:810984/239‑2 (MQ=255)
gccgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTACAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGAAaccaccgccga > 2:974675/1‑234 (MQ=255)
cgccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATaccaccgccgta < 1:974675/238‑7 (MQ=255)
gccAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATg < 1:355259/239‑1 (MQ=255)
cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGt > 1:812727/1‑238 (MQ=255)
cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGt > 1:262803/1‑238 (MQ=255)
cAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGt > 1:207936/1‑238 (MQ=255)
cAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAc > 1:1024598/1‑238 (MQ=255)
aaaCCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑GTGCCGATACCA‑‑CCGCCGCATGTCCCAGCAGCAACg > 2:1122299/1‑238 (MQ=255)
aTAGTTTGCGTCGCGATCCACGGGGTGATGCTCATAATGATGACCCCCGAGATTAAGGTGCGGAACA‑GATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATc < 1:530512/239‑1 (MQ=255)
tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 1:470283/1‑239 (MQ=255)
tGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGcc > 2:533259/1‑239 (MQ=255)
gCGTCGGAATCCACAGGGTGATGCCAATAATGATGACCCCCGAAATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCa < 1:903375/239‑1 (MQ=255)
cGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAAGCCGGATCAAGGCCaa > 1:406869/1‑239 (MQ=255)
cgcgATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATaccac < 1:203622/198‑1 (MQ=255)
cgcgATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATaccac > 2:203622/1‑198 (MQ=255)
taaTGCTCATAAGGATCACCCCCGAGATTAGGGTGCGGAACA‑GATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGc < 2:934284/206‑1 (MQ=255)
gATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg > 1:953773/1‑238 (MQ=255)
aTGCACAAATTGATGAC‑CCCCAGATTTAAGTTCCGTACAGGATTCCCAGGATCCCCGGCGCCCGCCATCGCCACAAAGAACCCGATGGTGGCAAGATCGCCAAACGGCGGCACCTGATTCCCCGGCACAC‑AAACAGCAATTAAAAG‑GGTGAGTGGGATAAAATTCGGGC‑TTGCCGTTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc < 2:173398/238‑1 (MQ=255)
tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 2:1019426/1‑239 (MQ=255)
tGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgccg > 1:105208/1‑239 (MQ=255)
aTAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGCGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCCCAC‑AAACAGCCATTAAAAT‑GGTGATAGGGATAAAAACCAGGC‑TTGCCGATA‑CA‑CCCGCCGTATGTCCCAGCAGCAACGCCGGCTCAAGGCCAATCAGGCACTCCTGACCGCCGAAcg > 2:157637/1‑237 (MQ=255)
aaTGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTccc < 1:1228349/187‑1 (MQ=255)
aaTGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTccc > 2:1228349/1‑187 (MQ=255)
aaTGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAgg > 1:934284/1‑208 (MQ=255)
gaCACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGGGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACGCCTGACCGCCGACCTTCGCCCGTa > 2:602067/1‑239 (MQ=255)
cccccGAGTTTAAGGGGCGGAACA‑GATTTCCAGGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaaa < 1:108367/237‑1 (MQ=255)
cacCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaa > 1:21160/1‑238 (MQ=255)
cGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTaaa < 1:1019426/235‑1 (MQ=255)
ggTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCCGTAAACGACTACGAg > 1:180037/1‑236 (MQ=255)
cGGACCA‑GATTCCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCt < 1:173606/238‑1 (MQ=255)
cGGAACA‑GATTTCCACGATGCACGGTGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc < 1:1034431/223‑1 (MQ=255)
cGGAACA‑GATTTCCACGATGCACGGTGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc > 2:1034431/1‑223 (MQ=255)
cACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGtt > 1:831181/1‑239 (MQ=255)
gATCCAGGGCGCCCGACATCGCAACGAAGAAGCCGATGGTGGCAAGATCGGCAGACGGCAGCACCTGATTCCCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa < 2:831181/239‑1 (MQ=255)
tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAg > 1:591316/1‑214 (MQ=255)
tGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc > 1:431022/1‑239 (MQ=255)
cACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca > 1:441353/1‑238 (MQ=255)
ccGGCGCCCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCATTTAAAAG‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccat < 1:886497/237‑1 (MQ=255)
ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATCGGCGTTAAACCATCCatgatg > 1:825163/1‑239 (MQ=255)
ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCGGTAAACGACTACGAGCCTGCTTAGCGCTGTGCGTTAAACCATCCctgatg > 2:187755/1‑239 (MQ=255)
gcattCGCCACGAAGAGGCCGATGGTGCCAAGACCGCAAACCGGCAGCACCTGATTCCCCGGC‑CACAAAACAGCAATAAAAAT‑GGTGGGGGGAAAAAAAATCAGGC‑TTGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATggg < 2:470283/235‑1 (MQ=255)
gCCACGAAGAAGCCGAGGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAG‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATAC‑‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt < 1:955544/239‑1 (MQ=255)
gCCAAGAAGCACCCGATGGTGGCAATACCGCAAAGCGGCAGCACCTGATTCCCCGGCACCA‑AAACAGAAATAAAAAT‑GGTGGGTGGAATAAAAACCAGGC‑TGGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt < 2:431022/239‑1 (MQ=255)
gaagaaGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 1:533259/239‑1 (MQ=255)
aagaagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCg > 1:229508/1‑239 (MQ=255)
aagaagCCGATGGTGGAAAGATCGCCAAAGGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GTTGAGTGGGAAAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCa < 1:457107/235‑1 (MQ=255)
aagaagCCGATGGTGAAAAGATCACAAAACGGCAGCACCTGATCCCCGGACACAC‑GAGCAGC‑ATTAAAATGGGTGAGGGGAATAAAAACCAGGC‑TGGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCg < 2:1201090/239‑1 (MQ=255)
ggacgcGATGGGAGCAAGATCCCAAAACGGCAGCACCATATTCCCCACAACAA‑AAACAGCAATTAAAAG‑GGTGAGTGGGATAAAAACCGGGC‑TTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 2:229508/231‑1 (MQ=255)
tggtggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTa < 1:688843/168‑1 (MQ=255)
tggtggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTa > 2:688843/1‑168 (MQ=255)
tggtggCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTagc > 2:267443/1‑239 (MQ=255)
gtggCAGGACCGCCAAACGGCAGCCCTTGATCCCCCGGACAAC‑AAACGCAAATTAAAAG‑GGGAAGGGGAAAAAAAACCCGGC‑TGCCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTagc < 2:21160/237‑1 (MQ=255)
gCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCAt > 2:1048443/1‑239 (MQ=255)
cGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa > 1:1234546/1‑191 (MQ=255)
gCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATc > 1:159136/1‑232 (MQ=255)
ccAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc < 1:234557/102‑1 (MQ=255)
ccAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc > 2:234557/1‑102 (MQ=255)
ggCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGtttt > 1:227477/1‑239 (MQ=255)
ccccTGATTCCCCGGCACAA‑AAACGGAAATTAAAGG‑GGTGAGGGGAATAAAAATCAGGC‑TGGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTAcc < 1:602067/236‑1 (MQ=255)
ctggATGACCAGTCACAC‑AACCAGCAATAAAAGT‑GGTGGGTGGAAAAAAAACCGGTC‑TAGCC‑AAACC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGcc < 2:1024598/236‑1 (MQ=255)
ggCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATa > 1:64920/1‑238 (MQ=255)
ccggccaaaaaCAGAAAATAAAAG‑GGGGGGGGGGAAAAAAAACCGGCGTCCCCGACAC‑‑CCCCGCCGAATTCCCCAGCAGCAACCCCGGAAAAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAAt < 2:105208/231‑1 (MQ=255)
cacac‑aAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCCATaca > 1:1104527/1‑238 (MQ=255)
acac‑aAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGTCACCG‑TTTTACCGTCAGCTGCAATacac > 2:44833/1‑237 (MQ=255)
acac‑aAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATaca > 1:462626/1‑237 (MQ=255)
aaaCAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTg > 2:529051/1‑239 (MQ=255)
gCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGt > 2:1040138/1‑149 (MQ=255)
gCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGt < 1:1040138/149‑1 (MQ=255)
gCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTag > 1:623773/1‑188 (MQ=255)
ttAAAAG‑GGGAAGGGGAAAAAAAAGCAGGC‑TGACCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaa < 2:138264/148‑1 (MQ=255)
tAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTaa > 1:148376/1‑238 (MQ=255)
aT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:416087/122‑1 (MQ=255)
aT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc > 2:416087/1‑122 (MQ=255)
aT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc > 2:300760/1‑169 (MQ=255)
aT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 1:300760/169‑1 (MQ=255)
gTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAg > 1:724582/1‑239 (MQ=255)
gAGTGGGATAAAAATCAGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatg > 1:138264/1‑148 (MQ=255)
aaaaaaagTCAGGT‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCg < 1:893946/235‑1 (MQ=255)
aGGC‑TTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGcc > 1:175955/1‑238 (MQ=255)
tcatcccaacccccCCGCCGTATGCCCCAAGCGCACCCCCAGATCAAGGCCAATCGGGAACCCCTGCCCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATc < 2:175955/224‑1 (MQ=255)
gCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATcac > 1:564982/1‑239 (MQ=255)
acccccCCGCCGTGTGCCCCAGCACAACCGCCGGATAAAGGCCAATCAGAAACCCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACaaaa < 2:148376/239‑1 (MQ=255)
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ATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGATCCACAGGGTGATGCTCATAATGATGACACCCGAGATTAAGGTGCGGAACA‑GATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACAC‑AAACAGCAATTAAAAT‑GGTGAGTGGGATAAAAATCAGGC‑TTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCATCACTGCCGCCGTTTTTACCGCCAGCTGCAATACACCTTTGACATCGTAACCCGCGAGGATGCCGATAATCAGCCCCATCACAAAA > NC_000913/2173125‑2173595
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
