Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I51 R1 223 69.9 1534784 95.1% 1459579 214.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,424,158 T→G L126* (TTA→TGA)  trkG → Rac prophage; potassium transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,424,1580TG100.0% 196.1 / NA 57L126* (TTA→TGA) trkGRac prophage; potassium transporter subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (27/30);  total (27/30)

TTGCATTGGTGGCGGAGCGTGGTATACAACTAAGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATTACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGACACTGTGGATAACTTATTCTTTATTAGGT  >  NC_000913/1423931‑1424369
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                   
ttGCATTGGTGGCGGAGCGTGGTATACAACTAAGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCggg                                                                                                                                                                                                             <  2:272117/236‑1 (MQ=255)
ttGCATTGGTGGCGGAGCGTGGTATACAACTAAGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCggg                                                                                                                                                                                                             <  1:393953/236‑1 (MQ=255)
                   tGGTATACAACTAAGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGt                                                                                                                                                                                           <  1:673016/235‑1 (MQ=255)
                                aGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATGGAGATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCggg                                                                                                                                                                                                             >  2:29971/1‑206 (MQ=255)
                                aGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATGGAGATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCggg                                                                                                                                                                                                             <  1:29971/206‑1 (MQ=255)
                                aGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGtt                                                                                                                                                                                    >  1:495980/1‑229 (MQ=255)
                                aGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGtt                                                                                                                                                                                    <  2:495980/229‑1 (MQ=255)
                                aGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAAtttt                                                                                                                                                                             >  1:526791/1‑236 (MQ=255)
                                     tCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        <  2:683169/236‑1 (MQ=255)
                                     tCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        >  2:421255/1‑236 (MQ=255)
                                      cTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        <  1:140044/235‑1 (MQ=255)
                                                   aCGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGa                                                                                                                                                              >  1:449737/1‑232 (MQ=255)
                                                      tACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTATTAGGTGGTTTAgac                                                                                                                                                              >  2:602085/1‑227 (MQ=255)
                                                                  gTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTg                                                                                                                                           <  1:421255/236‑1 (MQ=255)
                                                                   tttATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGt                                                                                                                                                                                           <  1:723809/187‑1 (MQ=255)
                                                                   tttATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGt                                                                                                                                                                                           >  2:723809/1‑187 (MQ=255)
                                                                            aTTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        <  1:283008/197‑1 (MQ=255)
                                                                            aTTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        >  2:283008/1‑197 (MQ=255)
                                                                            aTTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGTCGGGTGCTGTaatttc                                                                                                                                 >  2:124657/1‑231 (MQ=255)
                                                                            aTTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGcc                                                                                                                                 >  1:60083/1‑236 (MQ=255)
                                                                                 aaTGTGTTTGTTTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCattat                                                                                                                            <  1:745603/236‑1 (MQ=255)
                                                                                        tGGATTTTGTTTTCTGTTGTTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTTGGGAt                                                                                                                     >  1:20284/1‑236 (MQ=255)
                                                                                                    tCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGtt                                                                                                                                                                                    >  2:331193/1‑161 (MQ=255)
                                                                                                    tCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGtt                                                                                                                                                                                    <  1:331193/161‑1 (MQ=255)
                                                                                                         tattaGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGc                                                                                                                                  <  1:51365/206‑1 (MQ=255)
                                                                                                                gCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCattat                                                                                                                            >  2:24308/1‑205 (MQ=255)
                                                                                                                gCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCattat                                                                                                                            <  1:24308/205‑1 (MQ=255)
                                                                                                                         ttATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGcc                                                                                    >  1:628637/1‑236 (MQ=255)
                                                                                                                          tATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCg                                                                                   <  2:526791/236‑1 (MQ=255)
                                                                                                                                  ttGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCatat                                                                                                                                                                                                        <  2:528217/113‑1 (MQ=255)
                                                                                                                                  ttGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCatat                                                                                                                                                                                                        >  1:528217/1‑113 (MQ=255)
                                                                                                                                  ttGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTTCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCCGTCTGAAATGCCGTGGccc                                                                             >  1:444586/1‑235 (MQ=255)
                                                                                                                                  ttGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCatta                                                                                                                             >  2:723895/1‑188 (MQ=255)
                                                                                                                                  ttGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCatta                                                                                                                             <  1:723895/188‑1 (MQ=255)
                                                                                                                                                                   ctctGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        >  1:231736/1‑112 (MQ=255)
                                                                                                                                                                   ctctGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAgg                                                                                                                                                                        <  2:231736/112‑1 (MQ=255)
                                                                                                                                                                      tGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGAt                                         <  1:328418/236‑1 (MQ=255)
                                                                                                                                                                       gTTTGAAGGGTTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACGAACTCACTCCCCGCCTGGCCGAt                                         <  1:124657/235‑1 (MQ=255)
                                                                                                                                                                               gggTTTCTGGAATAACAACAACAGTGGCAACTTTAATTGATGATGTTAGTTCAGGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACgg                                <  2:449737/236‑1 (MQ=255)
                                                                                                                                                                                  tttCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTTTCAGTCAGAAATTCCGGGGCCATTTAAGGATGACAAAATCACTCCCCGCCTTGCCGGTACGTTACGGaca                             >  1:4630/1‑236 (MQ=255)
                                                                                                                                                                                  tttCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGGATTGGTGGTGCAAAGCTTTATCAGTCAGGAATGCCCGGGCCATTTTAGGATGACAAACTCACTCCCCGCCTTGCCGATACGTCACg                                 >  1:520526/1‑232 (MQ=255)
                                                                                                                                                                                    tCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACa                                                                <  1:195343/199‑1 (MQ=255)
                                                                                                                                                                                          aTAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGGATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGACACTTTgg                       >  1:481408/1‑234 (MQ=255)
                                                                                                                                                                                           tAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTTCCATTATTGGGGATTGGTGGTGCAAAGCTTTTTTATCTCGAAATGCCGGGGCCCTTTTAGGATGACAAactcac                                                         >  2:195343/1‑199 (MQ=255)
                                                                                                                                                                                           tAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGcc                                                                                                                                 >  2:262575/1‑127 (MQ=255)
                                                                                                                                                                                           tAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGcc                                                                                                                                 <  1:262575/127‑1 (MQ=255)
                                                                                                                                                                                                   acaGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCgggg                                                                                >  1:532318/1‑168 (MQ=255)
                                                                                                                                                                                                   acaGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCgggg                                                                                <  2:532318/168‑1 (MQ=255)
                                                                                                                                                                                                   acaGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGt                                     <  2:155415/211‑1 (MQ=255)
                                                                                                                                                                                                   acaGGAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGt                                     >  1:155415/1‑211 (MQ=255)
                                                                                                                                                                                                      ggAGCAACTGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGTGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTAACTCCCCGCACGGCCGATACGTCACGGACAACTTGGATAACTTATTCttt         >  1:528177/1‑236 (MQ=255)
                                                                                                                                                                                                        tgCAACTGTAATTGATAATGTTAAGTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGACACTGTGGATAACTTAtt             <  1:602085/229‑1 (MQ=255)
                                                                                                                                                                                                              ttaaaTTGATGATGTTAGTTCATGCCCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGACACTGTGGATAACTTATTCTTTATTAGGt  <  2:528177/232‑1 (MQ=255)
                                                                                                                                                                                                              tGTAATTGATGATGTTAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGACACTGTGGATAACTTATTCTTTATTAGGt  <  2:60083/235‑1 (MQ=255)
                                                                                                                                                                                                                tAATTGATGATGTTAGTTCATGTCCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGa                               <  1:676605/204‑1 (MQ=255)
                                                                                                                                                                                                                            ttAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAAt                                                                                                                                                                                >  2:612853/1‑47 (MQ=255)
                                                                                                                                                                                                                            ttAGTTCATGACCTCGGGCATATTTGTACTATCGGTCACAGTTAAAt                                                                                                                                                                                <  1:612853/47‑1 (MQ=255)
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                   
TTGCATTGGTGGCGGAGCGTGGTATACAACTAAGAAATCTGGCATTCAATTACGTACCCGTGATGGGTTTATTATAATTGTAATGTTTTGGATTTTGTTTTCTGTTATTAGTGCATTCCCTTTATG‑‑GATTGACTCAGAACTTAATTTAACGTTCATTGATGCTCTGTTTGAAGGGGTTTCTGGAATAACAACAACAGGAGCAACTGTAATTGATGATGTTAGTTCATTACCTCGGGCATATTTGTACTATCGGTCACAGTTAAATTTTATAGGTGGTTTAGGAGTTATTGTTCTGGCGGTTGCTGTATTGCCATTATTGGGTATTGGTGGTGCAAAGCTTTATCAGTCAGAAATGCCGGGGCCATTTAAGGATGACAAACTCACTCCCCGCCTGGCCGATACGTCACGGACACTGTGGATAACTTATTCTTTATTAGGT  >  NC_000913/1423931‑1424369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A