Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I51 R1 223 69.9 1534784 95.1% 1459579 214.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,676,734 T→G K390N (AAA→AAC)  pntA ← pyridine nucleotide transhydrogenase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,676,7340TG100.0% 203.0 / NA 58K390N (AAA→AAC) pntApyridine nucleotide transhydrogenase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (27/31);  total (27/31)

CTCCGACAACAATAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTTTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTCTCTTTGCACAACAGTTTCAGCAGATTAACGAGGTTTGTGCCGTAAAGCTGTGAGGATTGCGTCGGCAGACGGCCCGGAAGA  >  NC_000913/1676502‑1676962
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      
cTCCGACAACAATAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTc                                                                                                                                                                                                                                     >  1:149555/1‑236 (MQ=255)
cTCCGACAACAATAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTc                                                                                                                                                                                                                                     >  2:346992/1‑236 (MQ=255)
  ccGACAACAATAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGGAGTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCAc                                                                                                                                                                                                                                   >  2:232593/1‑236 (MQ=255)
   cGACAACAATAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACt                                                                                                                                                                                                                                  >  1:170086/1‑236 (MQ=255)
        acaaTAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGCGCAGGTAAATTTTTCCTCAGTGTTAACTTCCg                                                                                                                                                                                                                              >  2:582310/1‑235 (MQ=255)
          aataatCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGCATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGtgtt                                                                                                                                                                                                                                      >  1:703945/1‑225 (MQ=255)
                           cgTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCCCTTCCGGTGCCGCTTTTTGTgccgcc                                                                                                                                                                                                          >  2:173349/1‑236 (MQ=255)
                             ttGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTg                                                                                                                                                                                                        <  2:170086/236‑1 (MQ=255)
                                  gACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGgct                                                                                                                                                                                                   <  1:571733/236‑1 (MQ=255)
                                  aaCCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGgct                                                                                                                                                                                                   <  1:558647/235‑1 (MQ=255)
                                                 tgtATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGaa                                                                                                                                                                                    >  1:82812/1‑236 (MQ=255)
                                                      gCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATcgg                                                                                                                                                                                <  1:758315/235‑1 (MQ=255)
                                                          cgcgTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATcggc‑gggt                                                                                                                                                                          >  1:277189/1‑234 (MQ=255)
                                                           gcgTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCCTCAACGCGTATTTACGCAACGGTGAGCAGGTACATTGTTCCTCAGCGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCGGCGGCTGACTTATTACCTGaacggacggtt                                                                                                                                                                           >  2:648936/1‑226 (MQ=255)
                                                                             accacGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGgct                                                                                                                                                                                                   <  2:661595/193‑1 (MQ=255)
                                                                             accacGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGgct                                                                                                                                                                                                   >  1:661595/1‑193 (MQ=255)
                                                                               cacGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGCGGGTGCTGG‑CCgggacatctggcac                                                                                                                                                     >  2:645539/1‑225 (MQ=255)
                                                                                acGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGc                                                                                                                                                   >  1:350057/1‑236 (MQ=255)
                                                                                 tgTAATAACCGACAACGCAGGCACGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCCAAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  2:268007/235‑1 (MQ=255)
                                                                                 cGTAATACGCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTTCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  1:295110/236‑1 (MQ=255)
                                                                                 cGTAATACCCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  1:582310/236‑1 (MQ=255)
                                                                                 cGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCgg                                                                                                                                                                      <  1:279757/217‑1 (MQ=255)
                                                                                 cGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCgg                                                                                                                                                                      >  2:279757/1‑217 (MQ=255)
                                                                                 cGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑cccg                                                                                                                                                                 >  1:511473/1‑219 (MQ=255)
                                                                                 cGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAg                                                                                                                                                                 <  2:511473/221‑1 (MQ=255)
                                                                                 cGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  2:350057/236‑1 (MQ=255)
                                                                                   taatcgcggACAACGCAGGCCAGCGCGAAAGCGGTGAAGTGACCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACg                                                                                                                                                <  2:208828/228‑1 (MQ=255)
                                                                                    aataaCCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGTC‑GGGGCCGG‑CCAGGGAAGTTcttcccgact                                                                                                                                                >  2:81472/1‑226 (MQ=255)
                                                                                    aataaCCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  1:226909/233‑1 (MQ=255)
                                                                                         ccGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGTAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCCGGGAATTTTGCCCGCAccggtga                                                                                                                                           >  2:696177/1‑229 (MQ=255)
                                                                                              aaCGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGGCCCAGGT‑ATTTTGGCCGCACCGGTCACCGTc                                                                                                                                      >  1:602768/1‑235 (MQ=255)
                                                                                                         gcgcGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCATCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCcgcg                                                                                                                              <  1:675888/232‑1 (MQ=255)
                                                                                                          cgcgAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGgctgagct                                                                                                                                                                                              >  2:616418/1‑169 (MQ=255)
                                                                                                          cgcgAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGgctgagct                                                                                                                                                                                              <  1:616418/169‑1 (MQ=255)
                                                                                                          cgcgAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATcgg                                                                                                                                                                                <  2:57700/183‑1 (MQ=255)
                                                                                                          cgcgAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATcgg                                                                                                                                                                                >  1:57700/1‑183 (MQ=255)
                                                                                                              aaaaCGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATcaccac                                                                                                                     <  1:336884/236‑1 (MQ=255)
                                                                                                              aaaaCGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATcac                                                                                                                        <  1:10708/233‑1 (MQ=255)
                                                                                                                    gTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCCGGGAAATTCGCCCGCCCGGATCACGGTCACGCCGCGAATCACCCCatcatc                                                                                                               >  1:290341/1‑236 (MQ=255)
                                                                                                                    gTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCCCCCGGGTCACGGTGCCGCCGCGAAACACCACctcatc                                                                                                               >  1:760907/1‑236 (MQ=255)
                                                                                                                        aGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCACAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCaaa                                                                                                            <  1:460768/235‑1 (MQ=255)
                                                                                                                                aGGCATTATATCGGCTGAACGTTTGACATCCAGCCAAAAAGAATGATTGCCAGCGCATTCAACGCGTAATTACGCCACGGGGAGCAGGTCCATTGTTCCTCAGTGTTCCCTTCCGGTGCCGGTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAg                                                                                                    <  2:33711/235‑1 (MQ=255)
                                                                                                                                      tCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCgg                                                                                                                                                                      <  1:595987/164‑1 (MQ=255)
                                                                                                                                      tCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCgg                                                                                                                                                                      >  2:595987/1‑164 (MQ=255)
                                                                                                                                      tCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCCGGGAATTTCGCCCGCACGGGTCACGGTCACTCCGCGACTCACCACATCATCAAAATGAACAGTGATAtt                                                                                             >  1:487860/1‑236 (MQ=255)
                                                                                                                                             gcgcAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCCGGGAAATTTGCCCCCCCCGGTCACGGTCCCCCCCCGAATAACCCCAACATCACAAACAAAAGTGAGAATGCCggc                                                                                       >  2:519346/1‑233 (MQ=255)
                                                                                                                                              cacAACTCTTGCCAACCAGCCAAAAAGAATGATTGCCAGCGCCATCTACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCtt                                                                                     <  2:82812/234‑1 (MQ=255)
                                                                                                                                                  aCGGTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTtct                                                                                  <  1:696177/235‑1 (MQ=255)
                                                                                                                                                   cGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTctct                                                                                <  1:346992/236‑1 (MQ=255)
                                                                                                                                                        gCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCCG‑CCAGGGACTTTCGCCCGCACGGGCCACGGTCACCGCGCCAATCAACACACTCCCAACATCAACAGCGATATTTCTGGCCTCCTCTTTGc                                                                            >  2:326095/1‑235 (MQ=255)
                                                                                                                                                                     aaaGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTCTCTTTGCACAACAGttt                                                                  <  1:603846/232‑1 (MQ=255)
                                                                                                                                                                                         aTCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTCTCTTTGCACAACAGTTTCAGCAGATTAACGAGGTTtg                                              <  1:173349/232‑1 (MQ=255)
                                                                                                                                                                                           cAACTCGTATTTACGGCACGGTTAGCAGGTACATTTTCCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGAAATTGCCGTCTTTCTCTTTGCACAACAGTTTCAGCAGATTAACGAGGTTTGTGCCg                                         <  2:705548/235‑1 (MQ=255)
                                                                                                                                                                                           cAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  1:158799/130‑1 (MQ=255)
                                                                                                                                                                                                  tATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGGCGG‑GCAGGGAATTTTGCCCGCAGGGAtta                                                                                                                                           >  2:158799/1‑128 (MQ=255)
                                                                                                                                                                                                                  aGCAGGTACATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCa                                                                                                                                                  <  1:52815/107‑1 (MQ=255)
                                                                                                                                                                                                                        tccATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTCTCTTTGCACAACAGTTTCAGCAGATTAACGAGGTTTGTGCCGTAAAGCTGTGAGGATTGCGTCGGCAGAc             <  1:159795/232‑1 (MQ=255)
                                                                                                                                                                                                                         aCATTTTTCCTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGGAATTTTGCCCGCCCGGATCa                                                                                                                                           >  2:52815/1‑107 (MQ=255)
                                                                                                                                                                                                                                 ccTCAGTGTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTCTCTTTGCACAACAGTTTCAGCAGATTAACGAGGTTTGTGCCGTAAAGCTGTGAGGATTGCGTCGGCAGACGGCCCGGAAGa  <  1:232593/236‑1 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                      
CTCCGACAACAATAATCCCTGAAATCGCGTTGGTGACCGACATCAACGGTGTATGCAGCGCGTGCGATACATTCCACACCACGTAATAACCGACAACGCAGGCCAGCGCGAAAACGGTGAAGTGCCCAAGGAATTCTTTCGGCGCAACGCTTGCCATCCAGCCAAAAAGAATGATTGCCAGCGCCATCAACGCGTATTTACGCCACGGTGAGCAGGTACATTTTTCCTCAGTTTTCACTTCCGGTGCCGCTTTTTGTGCCGCCTGCGGCTGAGCTGATACCTGAATCGGC‑GGTGCCGG‑CCAGGTAATTTCGCCCGCACGGATCACGGTCACGCCGCGAATCACCACATCATCAAAATCAACAGTGATATTGCCGTCTTTCTCTTTGCACAACAGTTTCAGCAGATTAACGAGGTTTGTGCCGTAAAGCTGTGAGGATTGCGTCGGCAGACGGCCCGGAAGA  >  NC_000913/1676502‑1676962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A