Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I51 R1 223 69.9 1534784 95.1% 1459579 214.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,830,953 T→G N344H (AAT→CAT)  astC ← succinylornithine transaminase, PLP‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,830,9530TG100.0% 174.3 / NA 50N344H (AAT→CAT) astCsuccinylornithine transaminase, PLP‑dependent
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (27/23);  total (27/23)

CGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCG  >  NC_000913/1830724‑1831176
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                               
cgcCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTac                                                                                                                                                                                                                           >  1:49584/1‑236 (MQ=255)
  ccGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTaca                                                                                                                                                                                                                          >  1:32171/1‑235 (MQ=255)
                   tCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAAcc                                                                                                                                                                                                         >  2:327969/1‑235 (MQ=255)
                   tCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAAcc                                                                                                                                                                                                         >  1:404434/1‑235 (MQ=255)
                                         tgatgaACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAAc                                                                                                                                                                                   >  1:675872/1‑235 (MQ=255)
                                         tgatgaACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACa                                                                                                                                                                                  <  1:144198/236‑1 (MQ=255)
                                         tgatgaACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACa                                                                                                                                                                                  <  1:395223/236‑1 (MQ=255)
                                              aaCCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAAcc                                                                                                                                                                              >  1:677071/1‑235 (MQ=255)
                                              aaCCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCa                                                                                                                                                                             >  2:251270/1‑236 (MQ=255)
                                                 cTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTACGCCGCGAACTTCCATGAACataacctac                                                                                                                                                                          >  2:526360/1‑228 (MQ=255)
                                                          cAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGAttc                                                                                                                                                                 >  1:260364/1‑235 (MQ=255)
                                                           aaggtgtTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:192028/233‑1 (MQ=255)
                                                           aaaGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCCCCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:136144/236‑1 (MQ=255)
                                                           aaaGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  2:49584/236‑1 (MQ=255)
                                                           aaaGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:251270/236‑1 (MQ=255)
                                                           aaaGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:124051/236‑1 (MQ=255)
                                                              gtgtTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAg                                                                                                                                                             >  2:22285/1‑236 (MQ=255)
                                                                           gcTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                >  2:108570/1‑220 (MQ=255)
                                                                           gcTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:108570/220‑1 (MQ=255)
                                                                                      aTCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGGGATTAATAGTATTAAGACGCTCAACAAACCAGt                                                                                                                                     >  2:571894/1‑236 (MQ=255)
                                                                                           gTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTGATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGa                                                                                                                                <  1:154725/236‑1 (MQ=255)
                                                                                             ccGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACg                                                                                                                              <  2:261674/236‑1 (MQ=255)
                                                                                                gtcgccACATCGTCTTCGCTGACATTGACCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCCCGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACg                                                                                                                              <  2:404434/233‑1 (MQ=255)
                                                                                                 tcgtcACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGt                                                                                                                          >  2:207239/1‑236 (MQ=255)
                                                                                                 tcgtcACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATACCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGt                                                                                                                          >  2:68131/1‑236 (MQ=255)
                                                                                                     cACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCg                                                                                                                                                                        >  2:103347/1‑186 (MQ=255)
                                                                                                     cACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCg                                                                                                                                                                        <  1:103347/186‑1 (MQ=255)
                                                                                                      aCCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTaa                                                                                                                      <  1:22285/235‑1 (MQ=255)
                                                                                                      aCCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTaa                                                                                                                      <  2:677071/235‑1 (MQ=255)
                                                                                                           ttcttcGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCAt                                                                                                                >  2:512675/1‑236 (MQ=255)
                                                                                                                     aCATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACTCCCTTCAGCAtctc                                                                                                      >  2:151231/1‑236 (MQ=255)
                                                                                                                           aGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACCAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGgtgg                                                                                                >  2:487154/1‑235 (MQ=255)
                                                                                                                           aGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGgtgt                                                                                                >  1:134439/1‑236 (MQ=255)
                                                                                                                             cgcAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGaa                                                                                                                                                                                    >  2:77623/1‑150 (MQ=255)
                                                                                                                             cgcAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGaa                                                                                                                                                                                    <  1:77623/150‑1 (MQ=255)
                                                                                                                                    gcAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAg                                                                                       <  1:512675/236‑1 (MQ=255)
                                                                                                                                      aaaaCGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTtgatg                                                                                         <  1:207239/232‑1 (MQ=255)
                                                                                                                                             accacGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTcc                                                                                   >  2:558266/1‑231 (MQ=255)
                                                                                                                                                           cGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                >  2:89089/1‑140 (MQ=255)
                                                                                                                                                           cGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                >  2:172565/1‑140 (MQ=255)
                                                                                                                                                           cGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:89089/140‑1 (MQ=255)
                                                                                                                                                           cGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTaa                                                                                                                                                                <  1:172565/140‑1 (MQ=255)
                                                                                                                                                                tCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACg                                                                                                                                                   >  2:159154/1‑148 (MQ=255)
                                                                                                                                                                tCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACg                                                                                                                                                   <  1:159154/148‑1 (MQ=255)
                                                                                                                                                                         tCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTtgatg                                                                                         >  1:723067/1‑197 (MQ=255)
                                                                                                                                                                         tCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTtgatg                                                                                         <  2:723067/197‑1 (MQ=255)
                                                                                                                                                                            cGCCTGCTTTCGCCTCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCAGAGGCCAGCGGAtt                                                >  1:175900/1‑235 (MQ=255)
                                                                                                                                                                              ccTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTAcc                                             >  1:566466/1‑236 (MQ=255)
                                                                                                                                                                                       gccgcTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATGCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAACCCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAggt                                    <  1:68131/236‑1 (MQ=255)
                                                                                                                                                                                                                         cttAATCGGCATGCATTACCCAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAACCCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTACCGCCATTAAGCATCTCTGGTGTGTGGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGgcg  <  1:487154/234‑1 (MQ=255)
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                               
CGCCGAGACATCTGATCGCTCAACGGGACGGATGACCATCATGATGAACCTCGGCTAACAAAGTGTTCGCAAGCAGCTGCAAAGCGATCCAGTCCGGTCGTCACCTCTTCTTCGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCG  >  NC_000913/1830724‑1831176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A