Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F66 I1 R1
|
8 |
211.5 |
5526476 |
96.9% |
5355155 |
178.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,002,154 |
(GGC)2→1 |
coding (729‑731/951 nt) |
corA → |
magnesium/nickel/cobalt transporter |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4002154 |
4002156 |
3 |
189 [0] |
[0] 192 |
corA |
magnesium/nickel/cobalt transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4002153 | 0 (0.000) | 187 (0.940) |
109/350 |
0.2 |
100% |
coding (728/951 nt) |
corA |
magnesium/nickel/cobalt transporter |
| ? | NC_000913 |
4002157 = |
0 (0.000) | coding (732/951 nt) |
corA |
magnesium/nickel/cobalt transporter |
GATK/CNVnator alignment
N/A
