Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I52 R1
|
239 |
220.4 |
11079197 |
93.2% |
10325811 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
880,543 |
A→C |
intergenic (‑63/‑184) |
gstB ← / → dacC |
glutathione S‑transferase/D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6a |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 880,543 | 0 | A | C | 99.1%
| 767.9
/ ‑2.5
| 222 | intergenic (‑63/‑184) | gstB/dacC | glutathione S‑transferase/D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6a |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (123/96); total (125/97) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01 |
Only 100 of 222 total aligned reads displayed.
TTAGTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTAACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACGGTTTCT > NC_000913/880446‑880639
|
tAGTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACt < 1:2796686/100‑1 (MQ=255)
aGTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACtt > 1:1594596/1‑100 (MQ=255)
gTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACttt < 1:1389038/100‑1 (MQ=255)
gTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACttt > 1:3245439/1‑100 (MQ=255)
gTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACttt > 1:3052530/1‑100 (MQ=255)
ttGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACtttt > 2:1490524/1‑100 (MQ=255)
tGAATTATTCCGACCCCACAGCGTAGTCATACTCACCCCTTTTCCGAAAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTa > 1:4977343/1‑100 (MQ=255)
tGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTa < 1:3948691/100‑1 (MQ=255)
tGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTa > 2:3213726/1‑100 (MQ=255)
tGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTa < 2:2275325/100‑1 (MQ=255)
gAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTaa > 2:2382361/1‑100 (MQ=255)
aaTTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAg > 2:2112204/1‑100 (MQ=255)
aaTTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAg < 1:4211453/100‑1 (MQ=255)
aaTTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAg > 2:3504828/1‑100 (MQ=255)
aaTTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAg < 1:3212405/100‑1 (MQ=255)
ttattCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCa < 1:1258292/100‑1 (MQ=255)
tattCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCaa < 2:174540/100‑1 (MQ=255)
tattCCGACCCCACAGCGTAATCATACCCACCCCTTTTCCGACAGGCAGCCCCAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCaa < 2:5243426/100‑1 (MQ=255)
attCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAAc > 2:4093647/1‑100 (MQ=255)
ttCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACa < 1:890888/100‑1 (MQ=255)
ttCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACa > 1:1434356/1‑100 (MQ=255)
tCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAg < 2:4706012/100‑1 (MQ=255)
tCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAg > 1:2365998/1‑100 (MQ=255)
ccGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGc > 2:456193/1‑100 (MQ=255)
gACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTg < 2:3931439/100‑1 (MQ=255)
gACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTg > 1:4085482/1‑100 (MQ=255)
aCCCCACAGCGTAATCATACTCTCCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTgg < 1:3684012/100‑1 (MQ=255)
aCCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTgg < 2:3379142/100‑1 (MQ=255)
ccccACAGCGTAATCATACTCGCCCCTTTTCCGACAGGCAGCCACGCGCGGAACAGGACGCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGc < 2:5077810/100‑1 (MQ=255)
ccccACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGc < 2:1575128/100‑1 (MQ=255)
ccccACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGc < 2:2929844/100‑1 (MQ=255)
cacaGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCaaa < 2:517605/100‑1 (MQ=255)
cGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAAt < 2:2342148/100‑1 (MQ=255)
cGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAAt < 1:4048440/100‑1 (MQ=255)
gTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATg < 1:1988421/100‑1 (MQ=255)
gTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATg < 2:3145796/100‑1 (MQ=255)
aaTCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGac > 1:1508171/1‑100 (MQ=255)
aaTCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGac > 1:987001/1‑100 (MQ=255)
aTCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGaca > 1:811828/1‑100 (MQ=255)
cATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACAcc > 2:2188183/1‑100 (MQ=255)
cATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACAcc > 1:5240316/1‑100 (MQ=255)
aCTCACCCATTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGAAAAAAAAGAAAAAAAAATGACACCAGa < 2:3433351/100‑1 (MQ=255)
cTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGaa > 1:3875357/1‑100 (MQ=255)
cTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGaa > 1:3305061/1‑100 (MQ=255)
cTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGaa > 2:418062/1‑100 (MQ=255)
cACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAagc > 1:2442846/1‑100 (MQ=255)
aCCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAagca > 2:4741792/1‑100 (MQ=255)
cccTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGCAGTAAAGTTCACTTTTAACCAACAGCTGGCAAAAAAATGACACCAGAagcagc < 1:5178828/100‑1 (MQ=255)
cccTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAagcagc < 1:928891/100‑1 (MQ=255)
cTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGa > 1:1546967/1‑100 (MQ=255)
tCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCg < 1:3505131/100‑1 (MQ=255)
tCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCg > 1:106819/1‑100 (MQ=255)
cAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAgg > 2:557439/1‑100 (MQ=255)
ggCAGCCACAGGCTGAACAGGACTCCGATGGTGACGTAAAGTTCACTTTTACGCGACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGat > 2:421570/1‑100 (MQ=255)
ggCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGat > 2:2710225/1‑100 (MQ=255)
ggCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGat > 2:3066841/1‑100 (MQ=255)
ggCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGat < 2:875900/100‑1 (MQ=255)
ggCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGat > 1:2959604/1‑100 (MQ=255)
cAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGatat < 1:392011/100‑1 (MQ=255)
aGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATAtt > 1:2540756/1‑100 (MQ=255)
aGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATAtt > 1:367003/1‑100 (MQ=255)
gCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTg > 1:1310206/1‑100 (MQ=255)
gCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTg > 2:4423748/1‑100 (MQ=255)
gCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTg < 1:3157970/100‑1 (MQ=255)
gCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTg < 1:461247/100‑1 (MQ=255)
ccACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGc < 1:116131/100‑1 (MQ=255)
acaGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCAt > 1:1149670/1‑100 (MQ=255)
acaGACTGAACAGGACTCCGATGGTGAAGTAAAGGTCACTATTAAGCAACAGCTGGCAAACAAATGACACCAGAAACAGCCAAGCGGCAGGATATTGCAt > 2:4645889/1‑100 (MQ=255)
aGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATaa > 1:4808370/1‑100 (MQ=255)
ggCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATaaa > 1:3094857/1‑100 (MQ=255)
gCTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAAc < 1:1530047/100‑1 (MQ=255)
cTGAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACAAGAAGCACCGCAGCGGCACGATATTGCATAAACt > 2:1907299/1‑100 (MQ=255)
gaccAGGACTACGATGGTGAAGTAAAGTTCACTTTCAAGCAACAACAAACAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACttt < 2:3812001/97‑1 (MQ=255)
gAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACttt > 2:2122618/1‑100 (MQ=255)
gAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACttt > 1:4886036/1‑100 (MQ=255)
gAACAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACttt > 1:2679660/1‑100 (MQ=255)
aaCAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTa > 2:648517/1‑100 (MQ=255)
cAGGACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTaaa > 2:1264431/1‑100 (MQ=255)
ggACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTaaaaa > 2:1968525/1‑100 (MQ=255)
ggACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTaaaaa > 1:3429325/1‑100 (MQ=255)
ggACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTaaaaa > 1:1805822/1‑100 (MQ=255)
ggACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTaaaaa > 1:546416/1‑100 (MQ=255)
ggACTCCGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTaaaaa > 1:789571/1‑100 (MQ=255)
ccGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAACAACTTTa < 2:4825902/100‑1 (MQ=255)
ccGATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTa > 1:1848827/1‑100 (MQ=255)
gATGGTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTACAAACTTTAcc < 2:255915/100‑1 (MQ=255)
ggTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAAc < 2:4350223/100‑1 (MQ=255)
ggTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGC‑AAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACt > 1:4377552/1‑100 (MQ=255)
ggTGAAGTAAAGGTCACTTTTAAGCAACAGCTGGCAAATAAATGACACCAGAAGCAGCGAAGCGCCAGGATATTGCATAAACTTTAAACACTTTACGAAc < 2:5357983/100‑1 (MQ=255)
gTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACt < 1:588338/100‑1 (MQ=255)
gTGAAGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACt > 2:3017682/1‑100 (MQ=255)
gAAGTAAAGTTCACTTTTAAGCAACAGCTGGAAAAAAAATGACACCCGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAGCTTa > 2:5304818/1‑100 (MQ=255)
aaGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTAc < 1:3343123/100‑1 (MQ=255)
aGTAAAGTTCATTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATACACTTTAAAAACTTTACCAACTTACg < 2:4383400/100‑1 (MQ=255)
aGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACg < 1:2713800/100‑1 (MQ=255)
aGTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACg > 2:4965870/1‑100 (MQ=255)
gTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACgg < 1:4538740/100‑1 (MQ=255)
gTAAAGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTAACAACTTACgg > 2:2816224/1‑100 (MQ=255)
aaaGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACGGtt < 2:1277783/100‑1 (MQ=255)
aaGTTCACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACGGttt > 2:2663013/1‑100 (MQ=255)
|
TTAGTTGAATTATTCCGACCCCACAGCGTAATCATACTCACCCCTTTTCCGACAGGCAGCCACAGGCTGAACAGGACTCCGATGGTGAAGTAAAGTTAACTTTTAAGCAACAGCTGGCAAAAAAATGACACCAGAAGCAGCGAAGCGGCAGGATATTGCATAAACTTTAAAAACTTTACCAACTTACGGTTTCT > NC_000913/880446‑880639
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
