Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I52 R1
|
239 |
220.4 |
11079197 |
93.2% |
10325811 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,083,693 |
A→C |
A106A (GCA→GCC) |
efeB → |
deferrrochelatase, periplasmic |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,083,693 | 0 | A | C | 98.9%
| 664.1
/ ‑3.1
| 186 | A106A (GCA→GCC) | efeB | deferrrochelatase, periplasmic |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (97/86); total (99/87) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 192 total aligned reads displayed.
TGGTGGCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCAGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGTTATCGGT > NC_000913/1083596‑1083788
|
tggtggCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGagccgc < 1:4864448/100‑1 (MQ=255)
ggtggCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAgccgca > 1:1412880/1‑100 (MQ=255)
ggtggCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAgccgca < 1:97582/100‑1 (MQ=255)
tggCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCAcc < 1:3447170/100‑1 (MQ=255)
ggCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCa > 2:2585694/1‑100 (MQ=255)
gTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGaa > 1:4310911/1‑100 (MQ=255)
tctGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGaaa < 1:2608865/98‑1 (MQ=255)
ttGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAAc < 1:5420772/100‑1 (MQ=255)
tGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACg < 2:2558762/100‑1 (MQ=255)
aTGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGcc < 2:2176183/100‑1 (MQ=255)
aTGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGcc < 2:491043/100‑1 (MQ=255)
tgtgCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCa < 2:2527833/100‑1 (MQ=255)
tgtgCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCa < 2:1693719/100‑1 (MQ=255)
tgtgCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCa > 1:2169442/1‑100 (MQ=255)
gtgCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCaa < 1:516395/100‑1 (MQ=255)
tgCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCaaa < 1:2345543/100‑1 (MQ=255)
gCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCTGCACCAGAAACGCCAAAt > 2:2277641/1‑100 (MQ=255)
cTTGCCAGCGATAAAGCCGATCGTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCCGAAACGCCAAATc < 2:5226061/100‑1 (MQ=255)
ttGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATcc < 1:3270008/100‑1 (MQ=255)
tGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCcg < 2:4830378/100‑1 (MQ=255)
gCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCcgc > 2:3746930/1‑100 (MQ=255)
ccAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCcgcg > 2:3672935/1‑100 (MQ=255)
cAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCcgcgn < 1:4913995/100‑2 (MQ=255)
cAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCgcgc > 2:4039146/1‑100 (MQ=255)
cAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCgcgc < 2:2016638/100‑1 (MQ=255)
aGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGcc > 1:3125065/1‑100 (MQ=255)
aGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGcc < 2:2364950/100‑1 (MQ=255)
aGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGcc > 2:3241237/1‑100 (MQ=255)
gCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCt > 1:1752276/1‑100 (MQ=255)
gCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCt > 1:1863708/1‑100 (MQ=255)
cGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTg < 1:590360/100‑1 (MQ=255)
gATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGc > 2:2901645/1‑100 (MQ=255)
aTAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGcc > 1:4096425/1‑100 (MQ=255)
aTAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGcc < 2:5365017/100‑1 (MQ=255)
aTAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGcc < 2:5005347/100‑1 (MQ=255)
tAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGcca < 1:4073498/100‑1 (MQ=255)
aaaGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccac < 2:3951558/100‑1 (MQ=255)
aaGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacc < 1:3701916/100‑1 (MQ=255)
aaGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacc < 1:2236804/100‑1 (MQ=255)
aaGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacc < 1:3415922/100‑1 (MQ=255)
aaGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacc < 1:2934773/100‑1 (MQ=255)
aGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacca > 1:9084/1‑100 (MQ=255)
aGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacca > 1:2459326/1‑100 (MQ=255)
aGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacca > 2:372559/1‑100 (MQ=255)
aGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGccacca > 1:3883093/1‑100 (MQ=255)
gCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCcaccac > 2:4612130/1‑100 (MQ=255)
gCCGATCTTGAGCGGTTGTTTCGCTTGTTGACGCAGCGATTTGCTTGTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCGAATCCGCGCCTGCcaccac > 1:4948749/1‑100 (MQ=255)
ccGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACt > 1:2846118/1‑100 (MQ=255)
cGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTc < 1:3213706/100‑1 (MQ=255)
cGATCTTGAGCGGTTGTTTCGCTTGTGGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTc < 1:340105/100‑1 (MQ=255)
tCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGAt < 2:206341/100‑1 (MQ=255)
cTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGAtt > 2:3342010/1‑100 (MQ=255)
ttGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTc < 1:4587367/100‑1 (MQ=255)
tGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTcc < 2:4719157/100‑1 (MQ=255)
gAGCGGTTGTTTCGCTTGTTGCCTCAGCGTTTTGCTTTTCTGCCTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCg < 2:3740861/100‑1 (MQ=255)
gCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGc < 1:1179082/100‑1 (MQ=255)
ggTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCAt > 2:1396550/1‑100 (MQ=255)
tgttTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAGTCCGCGCCTGCCACCACTCGATTCCGGCATTCt < 2:1541012/100‑1 (MQ=255)
tgttTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCt > 2:185336/1‑100 (MQ=255)
tgttTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCt > 1:4520614/1‑100 (MQ=255)
tgttTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCt < 2:4816155/100‑1 (MQ=255)
ttCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTgg < 2:9033/100‑1 (MQ=255)
ttCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTgg < 1:961955/100‑1 (MQ=255)
ttCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTgg > 2:1967727/1‑100 (MQ=255)
tCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTggc < 2:158830/100‑1 (MQ=255)
cTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTggcggc > 2:854525/1‑100 (MQ=255)
cTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTggcggc < 1:2742100/100‑1 (MQ=255)
ttgttgACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCt < 1:2928688/100‑1 (MQ=255)
ttgACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACa < 2:3510654/100‑1 (MQ=255)
tgACTCAGCGTTTTGCTTTTCTTACTCTTTGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACAt > 2:4293820/1‑100 (MQ=255)
gACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACAtt > 2:4797182/1‑100 (MQ=255)
gACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACAtt > 1:3977534/1‑100 (MQ=255)
gACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACAtt > 2:3618540/1‑100 (MQ=255)
aCTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATCCCGGCATTCTTGGCGGCTACATTg > 2:446419/1‑100 (MQ=255)
ntCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTgc > 1:4443436/2‑100 (MQ=255)
cTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTgc < 2:5219619/100‑1 (MQ=255)
cTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTCCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTgc > 2:1673684/1‑100 (MQ=255)
cAGCGTTTTGCTTTTCTGACTCAGGGCGGTGCCGCACCAGAAACGCCAAATCCGCGTCTGACACCACTCGATTAAGGCATTCTTGGCGGATACATTgcgc > 2:676877/1‑100 (MQ=255)
cAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTgcgc > 1:288268/1‑100 (MQ=255)
gCGTTTTGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGccc < 1:1992644/100‑1 (MQ=255)
ttGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATaa < 1:4755712/100‑1 (MQ=255)
ttGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATaa > 2:3046491/1‑100 (MQ=255)
ttGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATaa > 1:2595701/1‑100 (MQ=255)
tGCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAAt > 2:234263/1‑100 (MQ=255)
gCTTTTCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAAtc > 2:306987/1‑100 (MQ=255)
ttCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCAc < 1:1612311/100‑1 (MQ=255)
tCTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCAcc > 1:609116/1‑100 (MQ=255)
cTGACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCa < 1:375504/100‑1 (MQ=255)
gACTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATc < 1:3773015/100‑1 (MQ=255)
gACTCAGGGCGGAGCAGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATc < 1:2988213/100‑1 (MQ=255)
cTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCAc > 2:4976058/1‑100 (MQ=255)
cTCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCAc < 2:2926812/100‑1 (MQ=255)
tCAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACg < 1:1502927/100‑1 (MQ=255)
cAGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCGTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGt < 1:5241780/100‑1 (MQ=255)
cAGGGCGGAGACGCACCAGAAACGCAAAATCCGCGCCTGACACCAATCGATTCAGGCATTCTTGGCGGCTACATTGCGCCCGATAATATCACCATCAAGt > 2:2755259/1‑100 (MQ=255)
aGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGtt > 1:4030535/1‑100 (MQ=255)
aGGGCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGtt < 2:5303006/100‑1 (MQ=255)
ggCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGTTAt > 1:755007/1‑100 (MQ=255)
gCGGAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGTTATc < 1:1037023/100‑1 (MQ=255)
ggAGCCGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGTTATCgg < 1:2205643/100‑1 (MQ=255)
|
TGGTGGCGTTTGATGTGCTTGCCAGCGATAAAGCCGATCTTGAGCGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCAGCACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCATCACGTTATCGGT > NC_000913/1083596‑1083788
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
