Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F422 I52 R1	239	220.4	11079197	93.2%	10325811	100.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,670,038	T→G	C114G (TGT→GGT)	ynfM →	putative arabinose efflux transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,670,038	0	T	G	96.6%	693.7 / 5.5	206	C114G (TGT→GGT)	ynfM	putative arabinose efflux transporter
Reads supporting (aligned to +/- strand): ref base T (3/4); new base G (104/93); total (109/97)
Fisher's exact test for biased strand distribution p-value = 7.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 206 total aligned reads displayed.

CGGCGATGTTGGCTATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTTGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTGGCA  >  NC_000913/1669940‑1670134

  gCGATGTTGGCTATTTGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTa                                                                                               >  1:3093229/1‑100 (MQ=255)

  gCGATGTTGGCTATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTa                                                                                               <  2:3827743/100‑1 (MQ=255)

   cGATGTTGGCTATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTAc                                                                                              <  2:3986274/100‑1 (MQ=255)

     gtGTTGGCTTTTGGTTTTCTGTGTACTGGCCAGCTATCCGATGCCATTGGTTGCAAACTAGTGATGGTCACGGCGCTACAGTTGGCTTCCATTTGCACGt                                                                                            <  2:431536/99‑1 (MQ=255)

       gTTGGCTATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTa                                                                                          <  2:1643827/100‑1 (MQ=255)

          ggCTATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACtt                                                                                       <  2:725115/100‑1 (MQ=255)

            cTATTGGTTTGCTGTCTACTGGCCCGCTATCCGATGCCATTTGTGTCAAACCAGTGATGGTCACGGCGCTACTGTTGGTCTCCATTGGTACGTTACTTTc                                                                                     <  2:5238434/100‑1 (MQ=255)

             tATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTGCTTTCg                                                                                    >  2:1623085/1‑100 (MQ=255)

             tATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCg                                                                                    >  1:3053235/1‑100 (MQ=255)

             tATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCg                                                                                    <  1:2916558/100‑1 (MQ=255)

             tATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCg                                                                                    >  2:4699359/1‑100 (MQ=255)

             tATTGGTTTGCTGTTCACTGGCCCGCTATCCGATGCCATTGATCACAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTTCTTTCg                                                                                    <  2:5241795/100‑1 (MQ=255)

              aTTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACATTCGa                                                                                   >  1:5270754/1‑100 (MQ=255)

               ttGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGAc                                                                                  <  1:5360921/100‑1 (MQ=255)

               ttGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGAc                                                                                  <  1:2861255/100‑1 (MQ=255)

               ttGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGAc                                                                                  <  2:5205443/100‑1 (MQ=255)

                 ggTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACaa                                                                                >  2:333447/1‑100 (MQ=255)

                 ggTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACaa                                                                                >  1:413427/1‑100 (MQ=255)

                 ggTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCAGTAGTACGTTACTTTCGACaa                                                                                >  1:5219578/1‑100 (MQ=255)

                  gTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAat                                                                               >  2:4070655/1‑100 (MQ=255)

                  gTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAat                                                                               >  1:2027443/1‑100 (MQ=255)

                  gTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAat                                                                               >  2:2428009/1‑100 (MQ=255)

                  gTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGGCGCAAACCAGTTATGGGCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAat                                                                               <  2:1382031/100‑1 (MQ=255)

                      gCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAatgatg                                                                           >  2:3609450/1‑100 (MQ=255)

                      gCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAatgatg                                                                           >  2:477246/1‑100 (MQ=255)

                       cTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAAtgatga                                                                          >  2:261956/1‑100 (MQ=255)

                       cTGTTTACTGGCCCGCGATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAAtgatga                                                                          <  1:4574780/100‑1 (MQ=255)

                        tGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGAc                                                                         >  1:352975/1‑100 (MQ=255)

                         gTTTACGGGCCCGCTACCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGAcc                                                                        <  2:3094647/100‑1 (MQ=255)

                            naCTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGc                                                                     >  1:4418490/2‑100 (MQ=255)

                              cTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTg                                                                   >  1:4662650/1‑100 (MQ=255)

                              cTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTg                                                                   >  2:1091854/1‑100 (MQ=255)

                              cTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTg                                                                   <  2:2947117/100‑1 (MQ=255)

                              cTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTg                                                                   >  2:3242013/1‑100 (MQ=255)

                                ggCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGc                                                                 >  1:1911732/1‑100 (MQ=255)

                                ggCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGc                                                                 >  1:1223332/1‑100 (MQ=255)

                                 gCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCa                                                                >  1:1580008/1‑100 (MQ=255)

                                  cccGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGTCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCAc                                                               >  2:837202/1‑100 (MQ=255)

                                   ccGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACg                                                              >  1:5102613/1‑100 (MQ=255)

                                    cGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACgg                                                             <  2:4677370/100‑1 (MQ=255)

                                    cGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACgg                                                             <  2:1960851/100‑1 (MQ=255)

                                      cTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCa                                                           <  1:57953/100‑1 (MQ=255)

                                          ccGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGCCAATGATGACCAGCTGCCACGGCAtttt                                                       >  2:4394737/1‑100 (MQ=255)

                                          ccGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCAtttt                                                       <  2:4979131/100‑1 (MQ=255)

                                          ccGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCAtttt                                                       >  1:3432047/1‑100 (MQ=255)

                                           cGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTg                                                      >  2:3751784/1‑100 (MQ=255)

                                           cGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTg                                                      >  1:2876525/1‑100 (MQ=255)

                                            gATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGGTGGCACGGCATTTTGa                                                     <  2:5318903/100‑1 (MQ=255)

                                            gATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGa                                                     <  1:1988426/100‑1 (MQ=255)

                                              tGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGAtt                                                   >  1:1505791/1‑100 (MQ=255)

                                              tGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGAtt                                                   <  2:4233466/100‑1 (MQ=255)

                                                 cATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATg                                                >  1:1054906/1‑100 (MQ=255)

                                                   ttGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATgcg                                              >  1:439762/1‑100 (MQ=255)

                                                     ggTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATgcgcg                                            >  1:4705559/1‑100 (MQ=255)

                                                     ggTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATgcgcg                                            >  2:1044487/1‑100 (MQ=255)

                                                      gTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATgcgcgc                                           >  2:2321109/1‑100 (MQ=255)

                                                       tCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGcc                                          <  2:5474448/100‑1 (MQ=255)

                                                        cGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCt                                         >  2:1257096/1‑100 (MQ=255)

                                                        cGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCt                                         >  2:2452911/1‑100 (MQ=255)

                                                         gCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCtt                                        <  2:349637/100‑1 (MQ=255)

                                                         gCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCtt                                        >  1:3856265/1‑100 (MQ=255)

                                                           aaaCCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGa                                      <  2:2005653/100‑1 (MQ=255)

                                                            aaCCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTTGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGAt                                     <  1:4267881/100‑1 (MQ=255)

                                                            aaCCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTTGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGAt                                     <  1:1455264/100‑1 (MQ=255)

                                                             aCCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGAtt                                    <  1:1785274/100‑1 (MQ=255)

                                                              ccAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTg                                   >  2:4420169/1‑100 (MQ=255)

                                                              ccAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTg                                   <  1:2772712/100‑1 (MQ=255)

                                                               cAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTgg                                  >  2:3524793/1‑100 (MQ=255)

                                                                 gTGATGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGc                                <  2:3388195/100‑1 (MQ=255)

                                                                    aTGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCttt                             >  2:5255044/1‑100 (MQ=255)

                                                                    aTGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCttt                             >  1:2750238/1‑100 (MQ=255)

                                                                    aTGGTCACGGCGCTACTGTTGGCCTCCATTGGCACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCttt                             >  2:4949305/1‑100 (MQ=255)

                                                                     tGGTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTc                            <  1:51208/100‑1 (MQ=255)

                                                                      ggTCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCg                           <  1:3218422/100‑1 (MQ=255)

                                                                        tCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGtt                         >  1:2965685/1‑100 (MQ=255)

                                                                        tCACGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGtt                         >  1:1591779/1‑100 (MQ=255)

                                                                           cGGCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAg                      <  2:5032175/100‑1 (MQ=255)

                                                                            ggCGCTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgt                     <  2:4197391/100‑1 (MQ=255)

                                                                            ggCGCGACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgt                     <  1:2233103/100‑1 (MQ=255)

                                                                             gcgcTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgtg                    <  1:3748986/100‑1 (MQ=255)

                                                                                cTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgtggcg                 >  1:2371886/1‑100 (MQ=255)

                                                                                cTACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgtggcg                 >  1:2045724/1‑100 (MQ=255)

                                                                                 tACTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgtggcgt                <  1:3969676/100‑1 (MQ=255)

                                                                                   cTGTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAgtggcgtgg              >  1:5399580/1‑100 (MQ=255)

                                                                                     gTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTCAGTGGCGTGGCa            >  1:4854185/1‑100 (MQ=255)

                                                                                     gTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCa            >  1:4816024/1‑100 (MQ=255)

                                                                                     gTTGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCa            >  2:1502425/1‑100 (MQ=255)

                                                                                      ttGGCCTCCTTTGGTACGTCACTCTCGACAATGATGACCAGCTGGAACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAg           <  2:5445101/100‑1 (MQ=255)

                                                                                      ttGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCan           <  1:2260183/100‑2 (MQ=255)

                                                                                      ttGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAg           <  1:721432/100‑1 (MQ=255)

                                                                                       tGGCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGc          <  1:5373220/100‑1 (MQ=255)

                                                                                        ggCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCt         >  2:3776346/1‑100 (MQ=255)

                                                                                         gCCTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTg        >  2:655769/1‑100 (MQ=255)

                                                                                           cTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCATGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTGAGTGGCGTGGCAGCTGtt      >  2:1874123/1‑100 (MQ=255)

                                                                                           cTCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGtt      >  1:4674563/1‑100 (MQ=255)

                                                                                            tCCATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTg     >  2:1784244/1‑100 (MQ=255)

                                                                                             ccATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTgg    <  1:4082598/100‑1 (MQ=255)

                                                                                             ccATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTgg    <  1:2604142/100‑1 (MQ=255)

                                                                                             ccATTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTgg    <  1:1273979/100‑1 (MQ=255)

                                                                                               aTTGGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTGGCa  >  1:3927897/1‑100 (MQ=255)

CGGCGATGTTGGCTATTGGTTTGCTGTTTACTGGCCCGCTATCCGATGCCATTGGTCGCAAACCAGTGATGGTCACGGCGCTACTGTTGGCCTCCATTTGTACGTTACTTTCGACAATGATGACCAGCTGGCACGGCATTTTGATTATGCGCGCCTTGATTGGGCTTTCGTTAAGTGGCGTGGCAGCTGTTGGCA  >  NC_000913/1669940‑1670134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A